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AT2G13350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent lipid-binding (CaLB domain) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 331 Blast hits to 320 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 329; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWFKeggNOG:ENOG410YIGGEMBL:AC006446EMBL:AC007209
EMBL:AK118570EMBL:BT005348EMBL:CP002685EnsemblPlants:AT2G13350
EnsemblPlants:AT2G13350.1entrez:815821Gene3D:2.60.40.150GeneID:815821
Gramene:AT2G13350.1hmmpanther:PTHR32246hmmpanther:PTHR32246:SF16HOGENOM:HOG000114072
InterPro:IPR000008KEGG:ath:AT2G13350OMA:TKSERSEPfam:PF00168
PhylomeDB:Q9SI42PIR:A84507Proteomes:UP000006548RefSeq:NP_178968.1
SMART:SM00239SMR:Q9SI42SUPFAM:SSF49562TAIR:AT2G13350
UniGene:At.40669UniProt:Q9SI42
Coordinates (TAIR10) chr2:-:5536525..5537730
Molecular Weight (calculated) 44162.90 Da
IEP (calculated) 10.02
GRAVY (calculated) -0.43
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFLAPCQIL ELNIISAQEL APVARCMKTY AIAWIDPERK LTTRVDNTGG TSPTWNDKFV FRLDEEALYD ATSIVVIEIY ALHWFKDIHV GTVQALISDL
101: VSPSSAMRFV TLEVLRASGR PHGLLNIAVG LIDNSGQSMP LLFEEDLLFH KKNISSKPVG LRRSKSDTSS MVDSPRKVTQ SRVSSTTNSG FDKDEFSSDS
201: QMVVYEPQRK TPNTMRQTKQ QLVYGTPMRP RKTTAYTPKR NTIEYGTPMR SRPIVITESD LGPSASVVAA QIAKEKALTG KDAESTVISV GERSVEGLRS
301: KLERWQANLP VVLDVGSSYQ PSSDYKTNSN FNPKSSYKPN EIVPRNPQMI GAPIQKPSGR NKKSGDNGLF SCFGNICGIE CSIVCGGSSG QKAAKKKKKK
401: K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)