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AT2G13100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.968
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, transmembrane transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate starvation-induced gene 3 (TAIR:AT3G47420.1); Has 21024 Blast hits to 20758 proteins in 2103 species: Archae - 375; Bacteria - 17368; Metazoa - 1290; Fungi - 904; Plants - 279; Viruses - 0; Other Eukaryotes - 808 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2271eggNOG:ENOG410IP3ZEMBL:AC006194EMBL:BT012605EMBL:BT014839EMBL:CP002685EnsemblPlants:AT2G13100
EnsemblPlants:AT2G13100.1entrez:815792ExpressionAtlas:Q9SL56GeneID:815792Genevisible:Q9SL56GO:GO:0006820GO:GO:0008643
GO:GO:0016021GO:GO:0022857GO:GO:0055062GO:GO:0055085hmmpanther:PTHR11662hmmpanther:PTHR11662:SF153HOGENOM:HOG000230522
InParanoid:Q9SL56InterPro:IPR000849InterPro:IPR011701InterPro:IPR020846KEGG:ath:AT2G13100OMA:NGPEGTHPaxDb:Q9SL56
Pfam:PF07690Pfam:Q9SL56Pfscan:PS50850PhylomeDB:Q9SL56PIR:D84505PIRSF:PIRSF002808PRO:PR:Q9SL56
PROSITE:PS50850ProteinModelPortal:Q9SL56Proteomes:UP000006548RefSeq:NP_001154513.1RefSeq:NP_001154514.1RefSeq:NP_178954.2STRING:3702.AT2G13100.1
SUPFAM:SSF103473TAIR:AT2G13100TMHMM:TMhelixUniGene:At.23888UniProt:Q9SL56
Coordinates (TAIR10) chr2:+:5390206..5391764
Molecular Weight (calculated) 53059.10 Da
IEP (calculated) 7.63
GRAVY (calculated) 0.65
Length 493 amino acids
Sequence (TAIR10)
(BLAST)
001: MQSRIVGLAP AFSLFPNLNT PHKTFTFHQI LVLIITFTAY ASFHASRKPP SIVKSVLGPP SLNSSSIDNG WAPFNGTQGT KRLGELDLAF LSSYALGMYF
101: AGHLGDRIDL RYFLVFGMMG SGILTLVFGL GYWMNVHTLG FYMSVQIVCG LFQSIGWPCV VSVVGNWCGK EKRGLIMGLW NSHTSVGNIL GSVIASSVLD
201: FGWGWSFVLP GVLVLVSGVV VFMFLVVSPN DLGFEELGKE IEIEMSLGEN VEESLRKHEA EGAVLLENVD DSSFAIGFLE AWRLPGVAPY AFCLFFSKLV
301: AYTFLYWLPY YLRHTAVAGV NLSHKTAGIL STVFDVGGVL GGISAGFISD KIKARALTSI TFLALSIPAL IMYRVYGSVS MFINIVLMFI SGLLVNGPYA
401: LITTAVAADL GTQDSIKGNG RALATVTAII DGTGSVGAAL GPLLAGYISS RGWNSVFFML IVSIFFAGLF LVRLAKSEIN TMRSGELIAS SVP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)