AT2G12550.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.986 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ubiquitin-associated (UBA)/TS-N domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ubiquitin-associated (UBA)/TS-N domain-containing protein; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:5114881..5118486 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62085.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.63 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||
| Length | 562 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKLKVAGTW GGILEVELEN WTLNMLRDEV AKRSGLDPES IKLIFAGKIL KDDGDATLTL SQLGIKENSK ILSCRQAAPE EGKSIMAEEE RARRLSRVKA 101: AATALSKRHA DGSLPIQDYN IELEDQGGHK VQFGTETDQS AAMMGLMLHT KAKSLIEIEM YSDAVEVLAM AEESFLLCDP KILELVDNLP MMEIDIVWCY 201: FLLRDIKCLS DAGVRLVRAR KGLERAHGKD LSRVRLLQAG QSPEMAIYLR LELLEGVVAY HTGQNDKALN ALKSAHAKFL QLQIPDETLS LVMGMGFQEK 301: DAKRALRLNN QDIASSVDFL IEERAKKAQK REQDLQRQSE ILEQKKYGVT PMKKAVDMQM LERLVSIGYA RELAAESLRR NENDIQKALD ILTDPKVNST 401: IQAYIESRKR KRQEQLVGIS VAELVSMGFE RGKATSALEA GGSREDTIQR LLSASVANPG TTTTSVINAT SSTNNVGAES SGFGGGAEQD SEMKDETTDD 501: IANRASTSSD GMEEERDSEI EDEIADEIAR VDALSAYDIN LDKEIEAINE YLAMLDASQE SC |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)