suba logo
AT2G07110.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
peroxisome 0.376
endoplasmic reticulum 0.266
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
EMBL:AC005693EMBL:CP002685EnsemblPlants:AT2G07110EnsemblPlants:AT2G07110.1entrez:815280GeneID:815280Gramene:AT2G07110.1
hmmpanther:PTHR11953hmmpanther:PTHR11953:SF1HOGENOM:HOG000095719InterPro:IPR020568KEGG:ath:AT2G07110OMA:TCFEVIWPhylomeDB:Q9ZV81
PIR:D84482Proteomes:UP000006548RefSeq:NP_178726.1SMR:Q9ZV81SUPFAM:SSF54211TAIR:AT2G07110UniGene:At.52666
UniProt:Q9ZV81
Coordinates (TAIR10) chr2:-:2952610..2953208
Molecular Weight (calculated) 17039.00 Da
IEP (calculated) 9.87
GRAVY (calculated) 0.04
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTKLFLSFL NGIHGTLSFI FSEDTKVLSA QYGPKARTKK NENAEKACLK SYGSLKPDRL VIVNAFSFSE RGLFCRLRKV EKEYETILKR TLQSICVLRV
101: VPNTTTSVII QVVHDGGSVS FLCSFHLGKH LLMLSETHII RYKQCLFEYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)