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AT2G06520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem II subunit X
Curator
Summary (TAIR10)
Encodes a protein with sequence similarity to the spinach photosystem II subunit PsbX.
Computational
Description (TAIR10)
photosystem II subunit X (PSBX); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbX (InterPro:IPR009518); Has 63 Blast hits to 63 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0IYeggNOG:ENOG410YXECEMBL:AC006420EMBL:AF370573
EMBL:AK226390EMBL:CP002685EnsemblPlants:AT2G06520EnsemblPlants:AT2G06520.1
entrez:815210GeneID:815210GO:GO:0009523GO:GO:0009535
GO:GO:0015979GO:GO:0016021Gramene:AT2G06520.1hmmpanther:PTHR34455
hmmpanther:PTHR34455:SF1HOGENOM:HOG000242514InterPro:IPR009518KEGG:ath:AT2G06520
OMA:MVIPEIAPfam:PF06596PhylomeDB:Q9SKI3PIR:S70489
Proteomes:UP000006548RefSeq:NP_565335.1STRING:3702.AT2G06520.1TAIR:AT2G06520
tair10-symbols:PSBXTMHMM:TMhelixUniGene:At.20999UniGene:At.22213
UniGene:At.49022UniGene:At.71077UniProt:Q9SKI3
Coordinates (TAIR10) chr2:-:2587868..2588218
Molecular Weight (calculated) 11814.80 Da
IEP (calculated) 11.49
GRAVY (calculated) 0.52
Length 116 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTSAMSLV TPLNQTRSSP FLKPLPLKPS KALVATGGRA QRLQVKALKM DKALTGISAA ALTASMVIPE IAEAAGSGIS PSLKNFLLSI ASGGLVLTVI
101: IGVVVGVSNF DPVKRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)