AT2G06500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.568 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hAT family dimerisation domain | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hAT family dimerisation domain; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: General transcription factor 2-related zinc finger protein (TAIR:AT1G35150.1); Has 1024 Blast hits to 763 proteins in 58 species: Archae - 2; Bacteria - 6; Metazoa - 608; Fungi - 2; Plants - 377; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:2580718..2583223 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68072.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.73 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||
| Length | 582 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDVIKENCKR DEKSWYMKKP ENPTISEVIN SDGNNNQQER ADEVDPENKV DNLDEVVQVD ENEFENKQQE QAEVVFEKKK TTSVYNDWRN LSKRLEEHEG 101: SHDHIICMTR WTELESRLQN KTTIDKYVQQ EINKEKIHWR EVLVRIIALV KTLAKNNLAF RGENKKIGED RNGNFLSFIE MIAEFDVVMR EHIRKIGAGE 201: IYSHYLSPKI QNELISMLAQ EIRLMIMKTI RASKYFSIIL DCTPDISHKE QMTILIRCVD ISSTPIKVEE FFLKFLEVND KTGEGLFSTI QEVLIDMELE 301: IDDVRGHGWD IFKEMVKGLT LKSLSQTRWE SHLESVKAIR FQTPEIRDAL LYLAEKTDDP KTRKAMDIEA EFPVKKKKII RRKKHFDHGN MKLSTEEDFR 401: INYFLTLIDQ ALISLESRFE QFQRYEQTFG FLFDLQKLTY ANDENLMASC VNLESSLKHG EHSDIDGADL FMELKVLREV LPNEVTKPIK VLDFLKRVEG 501: CYPNTWISFR ILLTILVSVA SAERSFSKLK LIKNYLRSTM SQDRLNGLAI LSIERAMLEK IDYATVMDDF AGKNASRIIF TQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)