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AT2G06200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : growth-regulating factor 6
Curator
Summary (TAIR10)
Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower
Computational
Description (TAIR10)
growth-regulating factor 6 (GRF6); CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: growth-regulating factor 5 (TAIR:AT3G13960.1); Has 491 Blast hits to 476 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 491; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:575eggNOG:ENOG410JV2HeggNOG:ENOG41106APEMBL:AC006413EMBL:AY060586EMBL:AY125572EMBL:CP002685
EnsemblPlants:AT2G06200EnsemblPlants:AT2G06200.1entrez:815176GeneID:815176Genevisible:Q9ZQ12GO:GO:0005524GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0048366Gramene:AT2G06200.1hmmpanther:PTHR31602hmmpanther:PTHR31602:SF4HOGENOM:HOG000154035
InterPro:IPR014977InterPro:IPR014978InterPro:IPR031137iPTMnet:Q9ZQ12KEGG:ath:AT2G06200OMA:GSAMEDNPANTHER:PTHR31602
PaxDb:Q9ZQ12Pfam:PF08879Pfam:PF08880Pfam:Q9ZQ12Pfscan:PS51666Pfscan:PS51667PhylomeDB:Q9ZQ12
PIR:A84476PRIDE:Q9ZQ12PRO:PR:Q9ZQ12PROSITE:PS51666PROSITE:PS51667Proteomes:UP000006548RefSeq:NP_027759.1
SMART:SM00951STRING:3702.AT2G06200.1TAIR:AT2G06200tair10-symbols:AtGRF6tair10-symbols:GRF6UniGene:At.27363UniProt:Q9ZQ12
Coordinates (TAIR10) chr2:+:2426340..2427255
Molecular Weight (calculated) 28212.00 Da
IEP (calculated) 8.80
GRAVY (calculated) -0.92
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MATRIPFTES QWEELENQAL VFKYLAANMP VPPHLLFLIK RPFLFSSSSS SSSSSSFFSP TLSPHFGWNV YEMGMGRKID AEPGRCRRTD GKKWRCSKEA
101: YPDSKYCERH MHRGKNRSSS RKPPPTQFTP NLFLDSSSRR RRSGYMDDFF SIEPSGSIKS CSGSAMEDND DGSCRGINNE EKQPDRHCFI LGTDLRTRER
201: PLMLEEKLKQ RDHDNEEEQG SKRFYRFLDE WPSSKSSVST SLFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)