suba logo
AT2G06040.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.974
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:CP002685EnsemblPlants:AT2G06040EnsemblPlants:AT2G06040.1entrez:815159Gene3D:3.80.10.10
GeneID:815159Gramene:AT2G06040.1hmmpanther:PTHR24006hmmpanther:PTHR24006:SF493InParanoid:F4IIC2InterPro:IPR006553InterPro:IPR032675
iPTMnet:F4IIC2KEGG:ath:AT2G06040KO:K15082OMA:ANVCKLTPaxDb:F4IIC2PRIDE:F4IIC2ProteinModelPortal:F4IIC2
Proteomes:UP000006548RefSeq:NP_178661.2SMART:SM00367SMR:F4IIC2STRING:3702.AT2G06040.1SUPFAM:SSF52047TAIR:AT2G06040
UniGene:At.41117UniGene:At.45785UniProt:F4IIC2
Coordinates (TAIR10) chr2:-:2352333..2355419
Molecular Weight (calculated) 84667.40 Da
IEP (calculated) 4.70
GRAVY (calculated) -0.36
Length 762 amino acids
Sequence (TAIR10)
(BLAST)
001: MTILRSREIP SVSPKPLPKE SDTEPSTPAR TLEPELHRSP DETAPELGLV DEPTHTTRRR SLRLAHQFDG DDCVTEKEVS VDEKFLSLRS GKRVAKRGVD
101: YGIEIESSKF DFDLKLGESA SKTKRVCVDL VEETIVKNES EDSVDLEDKS SSGVLGDSLA EKWYVVEVEN ESNNKGKGIM EDSYGESDVI CGQSYEKQSS
201: SMGRRRYTRE EKGKGIMQVE DVSSPVTVEI VEVDEEEMEI ESLVNSEKPP DVSVTELAAT MANVEQAQNR ENSNEIGNDS RTQHFRDIAE RIAHRFAHFD
301: AQVEEEEDLS DKEGEQQVED WPGPFSTAMK IIKDREEYTT PHVGIGVSNK ERSSPTIWVP RSNFSFPPRK APSLQELSLR VLVKNADAIT SLDYVPDTLR
401: VKLCQLLCDS RRMDLHFLDL LVQGSPTEIC VPDCSWLTEE EFTECFKNCD TSNLMVLQLD QCGRCMPDYI LPFTLARSPK VLPMLSTLSI SGACRLSDVG
501: LRQLVSSAPA ITSINLNQCS LLTSSSIDML SDSLGSVLRE LYINECQNID MKHILAALKK FEKLEVLSLA DLPSVKGRFL KEFVTARGQT LKQLILTNSR
601: KLSDSSIKVI SENCPNLSVL DLANVCKLTD SSLGYLANGC QALEKLIFCR NPFSDEAVAA FVETAGGSLK ELSLNNVKKV GHNTALALAK HSDKLQILDI
701: SWCREMSNDL LGYIVDNSSS LKVLKVFGCS QVTDVFVKGH SNPNVKILGV KMDPFLGHLS DN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)