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AT2G06000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 50374 Blast hits to 14280 proteins in 277 species: Archae - 4; Bacteria - 40; Metazoa - 520; Fungi - 618; Plants - 47817; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC005970EMBL:AK228150
EMBL:CP002685EnsemblPlants:AT2G06000EnsemblPlants:AT2G06000.1EnsemblPlants:AT2G06000.2
entrez:815153GeneID:815153Genevisible:Q9ZUE9Gramene:AT2G06000.1
Gramene:AT2G06000.2hmmpanther:PTHR24015hmmpanther:PTHR24015:SF767HOGENOM:HOG000240832
InParanoid:Q9ZUE9InterPro:IPR002885KEGG:ath:AT2G06000OMA:FNDMGSF
PaxDb:Q9ZUE9Pfam:PF01535Pfam:PF13041Pfam:Q9ZUE9
Pfscan:PS51375PhylomeDB:Q9ZUE9PIR:A84474PRIDE:Q9ZUE9
PRO:PR:Q9ZUE9PROSITE:PS51375ProteinModelPortal:Q9ZUE9Proteomes:UP000006548
RefSeq:NP_178657.1RefSeq:NP_973429.1SMR:Q9ZUE9STRING:3702.AT2G06000.1
TAIR:AT2G06000TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.41123
UniProt:Q9ZUE9
Coordinates (TAIR10) chr2:-:2328000..2329610
Molecular Weight (calculated) 59776.10 Da
IEP (calculated) 8.30
GRAVY (calculated) 0.06
Length 536 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRTTFATAI AHFHTHSHGG AQARPLQNNT REVIHCPEAW LVKIVSTLFV YRVPDSDLCF CYLSKNLNPF ISFEVVKKLD NNPHIGFRFW EFSRFKLNIR
101: HSFWTYNLLT RSLCKAGLHD LAGQMFECMK SDGVSPNNRL LGFLVSSFAE KGKLHFATAL LLQSFEVEGC CMVVNSLLNT LVKLDRVEDA MKLFDEHLRF
201: QSCNDTKTFN ILIRGLCGVG KAEKALELLG VMSGFGCEPD IVTYNTLIQG FCKSNELNKA SEMFKDVKSG SVCSPDVVTY TSMISGYCKA GKMREASSLL
301: DDMLRLGIYP TNVTFNVLVD GYAKAGEMLT AEEIRGKMIS FGCFPDVVTF TSLIDGYCRV GQVSQGFRLW EEMNARGMFP NAFTYSILIN ALCNENRLLK
401: ARELLGQLAS KDIIPQPFMY NPVIDGFCKA GKVNEANVIV EEMEKKKCKP DKITFTILII GHCMKGRMFE AVSIFHKMVA IGCSPDKITV SSLLSCLLKA
501: GMAKEAYHLN QIARKGQSNN VVPLETKTAN ATLAAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)