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AT2G05630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15494556 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
in the Arabidopsis autophagy pathway
Computational
Description (TAIR10)
ATG8D; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT1G62040.2); Has 1524 Blast hits to 1522 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 726; Fungi - 178; Plants - 302; Viruses - 3; Other Eukaryotes - 315 (source: NCBI BLink).
Protein Annotations
BioGrid:512EMBL:AB073178EMBL:AC006220EMBL:AK227339EMBL:AY087320EMBL:BT003090EMBL:CP002685
EnsemblPlants:AT2G05630EnsemblPlants:AT2G05630.1entrez:815112ExpressionAtlas:Q9SL04GeneID:815112Genevisible:Q9SL04GO:GO:0000421
GO:GO:0005874GO:GO:0006914GO:GO:0015031GO:GO:0033110hmmpanther:PTHR10969hmmpanther:PTHR10969:SF43HOGENOM:HOG000232034
InParanoid:Q9SL04IntAct:Q9SL04InterPro:IPR004241InterPro:IPR029071PANTHER:PTHR10969Pfam:PF02991Pfam:Q9SL04
PhylomeDB:Q9SL04PIR:H84470PRO:PR:Q9SL04ProteinModelPortal:Q9SL04Proteomes:UP000006548RefSeq:NP_178631.1SMR:Q9SL04
SUPFAM:SSF54236TAIR:AT2G05630tair10-symbols:ATG8DUniGene:At.43087UniProt:Q9SL04
Coordinates (TAIR10) chr2:-:2083211..2084775
Molecular Weight (calculated) 13907.90 Da
IEP (calculated) 8.80
GRAVY (calculated) -0.29
Length 120 amino acids
Sequence (TAIR10)
(BLAST)
001: MAISSFKHEH PLEKRQAEAA RIREKYPDRI PVIVERAEKS DVPDIDRKKY LVPADLTVGQ FVYVVRKRIK LSPEKAIFIF VKNILPPTAA IMSAIYEEHK
101: DEDGFLYMSY SGENTFGIFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)