AT2G05590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TLD-domain containing nucleolar protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TLD-domain containing nucleolar protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT4G39870.2); Has 669 Blast hits to 669 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 372; Fungi - 60; Plants - 112; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:2067196..2068650 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28959.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.22 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||
| Length | 263 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHALKDKVSQ KLSNLFADSP SQSASPRYSN SDSPKARLNS SVGKSLSSYF SFVVPQSGNE EDSELCPPLP IRTESYECIE NCKSANGQAK AGTFISIGED 101: KDCELRVSAK VEESGNDYFD GVKKMRELTE SSVFITANLF EFLHASLPNI VRGCKWILLY STLKHGISLR TLLRRSGELP GPCLLVAGDK QGAVFGALLE 201: CPLQPTPKRK YQGTSQTFLF TTIYGEPRIF RPTGANRYYL MCMNEFLAFG GGGNFALCLD EDL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)