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AT2G05580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21109274 (2011): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycine-rich protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycine-rich protein family; LOCATED IN: endomembrane system; Has 461494 Blast hits to 65250 proteins in 2955 species: Archae - 1131; Bacteria - 108804; Metazoa - 177058; Fungi - 32939; Plants - 47988; Viruses - 6940; Other Eukaryotes - 86634 (source: NCBI BLink).
Protein Annotations
EMBL:AC006220EMBL:CP002685EnsemblPlants:AT2G05580EnsemblPlants:AT2G05580.1entrez:3768507GeneID:3768507Gramene:AT2G05580.1
KEGG:ath:AT2G05580OMA:PKRRDGPPIR:C84470Proteomes:UP000006548RefSeq:NP_178626.1STRING:3702.AT2G05580.1TAIR:AT2G05580
TMHMM:TMhelixUniGene:At.47271UniProt:Q9SL09
Coordinates (TAIR10) chr2:+:2055578..2056563
Molecular Weight (calculated) 26009.60 Da
IEP (calculated) 10.64
GRAVY (calculated) -0.99
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMNSRALIV WFLLLSAVFA IKVVASIDDT KQVGENQVEE SKSTCKYGNC AQYGENHFVE TDEVLDGEEE EESKNNQGGI GRGQGGQKGG GGGGQGGQKG
101: GGGGGQGGQK GGGGGQGGQK GGGGGQGGQK GGGGGGQGGQ KGGGGGGQGG QKGGGGGGQG GQKGGGGQGG QKGGGGQGGQ KGGGGQGGQK GGGGRGQGGM
201: KGGGGGGQGG HKGGGGGGGQ GGHKGGGGGG GQGGHKGGGG GGQGGGGHKG GGGGQGGHKG GGGGGHVGGG GRGGGGGGRG GGGSGGGGGG GSGRGGGGGG
301: GM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)