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AT2G05520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glycine-rich protein 3
Curator
Summary (TAIR10)
Encodes a glycine-rich protein that is expressed mainly in stems and leaves. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to dessication.
Computational
Description (TAIR10)
glycine-rich protein 3 (GRP-3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, response to desiccation, response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein 3 short isoform (TAIR:AT2G05380.1); Has 67000 Blast hits to 17256 proteins in 1389 species: Archae - 28; Bacteria - 27528; Metazoa - 20984; Fungi - 3299; Plants - 7053; Viruses - 888; Other Eukaryotes - 7220 (source: NCBI BLink).
Protein Annotations
BioGrid:501EMBL:AC006220EMBL:AK318772EMBL:AY065139
EMBL:AY081567EMBL:BT000704EMBL:CP002685EMBL:S47409
EnsemblPlants:AT2G05520EnsemblPlants:AT2G05520.1entrez:815101ExpressionAtlas:Q9SL15
GeneID:815101Genevisible:Q9SL15GO:GO:0005578GO:GO:0009269
GO:GO:0009723GO:GO:0009737GO:GO:0009751hmmpanther:PTHR36732
InParanoid:Q9SL15IntAct:Q9SL15InterPro:IPR010800KEGG:ath:AT2G05520
OMA:GRCCSHAPaxDb:Q9SL15Pfam:PF07172Pfam:Q9SL15
PIR:E84469PIR:JQ1062PRIDE:Q9SL15PRO:PR:Q9SL15
ProteinModelPortal:Q9SL15Proteomes:UP000006548RefSeq:NP_001031335.1RefSeq:NP_001031336.1
RefSeq:NP_001031337.1RefSeq:NP_001118277.1RefSeq:NP_178620.1STRING:3702.AT2G05520.1
TAIR:AT2G05520tair10-symbols:ATGRP-3tair10-symbols:ATGRP3tair10-symbols:GRP-3
tair10-symbols:GRP3TMHMM:TMhelixUniGene:At.48426UniProt:Q9SL15
Coordinates (TAIR10) chr2:+:2026217..2026882
Molecular Weight (calculated) 14290.30 Da
IEP (calculated) 8.75
GRAVY (calculated) -0.70
Length 145 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKALVLLG LFAVLLVVSE VAAASSATVN SESKETVKPD QRGYGDNGGN YNNGGGYQGG GGNYQGGGGN YQGGGGNYQG GGGRYQGGGG RYQGGGGRYQ
101: GGGGRQGGGG SGGSYCRHGC CYRGYNGCSR CCSYAGEAVQ TQPGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)