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AT2G05370.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 6 (TAIR:AT3G49500.1); Has 65 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC007289EMBL:CP002685EnsemblPlants:AT2G05370EnsemblPlants:AT2G05370.1entrez:815085ExpressionAtlas:Q9SHT7GeneID:815085
GO:GO:0003968Gramene:AT2G05370.1hmmpanther:PTHR23079hmmpanther:PTHR23079:SF9InterPro:IPR007855PANTHER:PTHR23079PIR:F84467
Proteomes:UP000006548RefSeq:NP_178605.1TAIR:AT2G05370UniGene:At.41191UniProt:Q9SHT7
Coordinates (TAIR10) chr2:-:1960413..1961425
Molecular Weight (calculated) 24294.70 Da
IEP (calculated) 6.78
GRAVY (calculated) -0.45
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNLVVSQVT ISGFGESTKT KELTDYLENK VGLLVWRCRL KTSWTPHGSY PNFEIIDTSN IPKFDCYERV VPHAFVHCDA HKSLMDAAEQ SKLILGGQPL
101: KFSLSSENPY TLNPYKLTGV SLEIGTLASS PRVWYRTADD DIYETSAVDL LDDNDPWIRT TDFTQSGAIR RCLGYRVFIS PRDHNKWTKV LDYLKTQRVN
201: TEHKDVMDFW Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)