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AT2G04890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SCARECROW-like 21
Curator
Summary (TAIR10)
Encodes a scarecrow-like protein (SCL21). Member of GRAS gene family.
Computational
Description (TAIR10)
SCARECROW-like 21 (SCL21); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT5G48150.2); Has 2478 Blast hits to 2441 proteins in 302 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2474; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:437eggNOG:ENOG410JX5SeggNOG:ENOG411049WEMBL:AC006955EMBL:AC007211EMBL:AF210732EMBL:AK175210
EMBL:AK175990EMBL:AK176099EMBL:AK221099EMBL:BT026455EMBL:CP002685EnsemblPlants:AT2G04890EnsemblPlants:AT2G04890.1
entrez:815036GeneID:815036Genevisible:Q9S7H5GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT2G04890.1hmmpanther:PTHR31636hmmpanther:PTHR31636:SF38HOGENOM:HOG000238577InParanoid:Q9S7H5IntAct:Q9S7H5InterPro:IPR005202
KEGG:ath:AT2G04890OMA:MSAEQHCPaxDb:Q9S7H5Pfam:PF03514Pfam:Q9S7H5Pfscan:PS50985PhylomeDB:Q9S7H5
PIR:G84462PRIDE:Q9S7H5PRO:PR:Q9S7H5PROSITE:PS50985ProteinModelPortal:Q9S7H5Proteomes:UP000006548RefSeq:NP_178566.1
STRING:3702.AT2G04890.1TAIR:AT2G04890tair10-symbols:SCL21UniGene:At.48419UniGene:At.71110UniProt:Q9S7H5
Coordinates (TAIR10) chr2:-:1720575..1721816
Molecular Weight (calculated) 46470.30 Da
IEP (calculated) 5.50
GRAVY (calculated) -0.04
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNVRGSIML QPLPEIAESI DDAICHELSM WPDDAKDLLL IVEAISRGDL KLVLVACAKA VSENNLLMAR WCMGELRGMV SISGEPIQRL GAYMLEGLVA
101: RLAASGSSIY KSLQSREPES YEFLSYVYVL HEVCPYFKFG YMSANGAIAE AMKDEERIHI IDFQIGQGSQ WIALIQAFAA RPGGAPNIRI TGVGDGSVLV
201: TVKKRLEKLA KKFDVPFRFN AVSRPSCEVE VENLDVRDGE ALGVNFAYML HHLPDESVSM ENHRDRLLRM VKSLSPKVVT LVEQECNTNT SPFLPRFLET
301: LSYYTAMFES IDVMLPRNHK ERINIEQHCM ARDVVNIIAC EGAERIERHE LLGKWKSRFS MAGFEPYPLS SIISATIRAL LRDYSNGYAI EERDGALYLG
401: WMDRILVSSC AWK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)