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AT2G04880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc-dependent activator protein-1
Curator
Summary (TAIR10)
Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic acid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1.
Computational
Description (TAIR10)
zinc-dependent activator protein-1 (ZAP1); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor family protein (TAIR:AT4G26640.2); Has 5944 Blast hits to 3097 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 5898; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
BioGrid:436eggNOG:ENOG410JAFUeggNOG:ENOG4111DPQEMBL:AC006955EMBL:AC007211EMBL:AF442389EMBL:AF442390
EMBL:BT029167EMBL:CP002685EMBL:X92976EnsemblPlants:AT2G04880EnsemblPlants:AT2G04880.1entrez:815035EvolutionaryTrace:Q9SI37
ExpressionAtlas:Q9SI37Gene3D:2.20.25.80GeneID:815035Genevisible:Q9SI37GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0008270GO:GO:0009863GO:GO:0043565GO:GO:0045893hmmpanther:PTHR31221hmmpanther:PTHR31221:SF41HOGENOM:HOG000154863
InParanoid:Q9SI37InterPro:IPR003657iPTMnet:Q9SI37KEGG:ath:AT2G04880KO:K18834MINT:MINT-8059523OMA:CTHPNCK
PaxDb:Q9SI37PDB:2AYDPDBsum:2AYDPfam:PF03106Pfam:Q9SI37Pfscan:PS50811PhylomeDB:Q9SI37
PIR:F84462PRIDE:Q9SI37PRO:PR:Q9SI37PROSITE:PS50811ProteinModelPortal:Q9SI37Proteomes:UP000006548RefSeq:NP_178565.1
RefSeq:NP_849936.1SMART:SM00774SMR:Q9SI37STRING:3702.AT2G04880.1SUPFAM:0050605SUPFAM:SSF118290TAIR:AT2G04880
tair10-symbols:ATWRKY1tair10-symbols:WRKY1tair10-symbols:ZAP1UniGene:At.48419UniGene:At.71110UniProt:Q9SI37
Coordinates (TAIR10) chr2:+:1718557..1720219
Molecular Weight (calculated) 54013.00 Da
IEP (calculated) 6.90
GRAVY (calculated) -0.85
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEVGKVLAS DMELDHSNET KAVDDVVATT DKAEVIPVAV TRTETVVESL ESTDCKELEK LVPHTVASQS EVDVASPVSE KAPKVSESSG ALSLQSGSEG
101: NSPFIREKVM EDGYNWRKYG QKLVKGNEFV RSYYRCTHPN CKAKKQLERS AGGQVVDTVY FGEHDHPKPL AGAVPINQDK RSDVFTAVSK GEQRIDIVSL
201: IYKLCIVSYD IMFVEKTSGS SVQTLRQTEP PKIHGGLHVS VIPPADDVKT DISQSSRITG DNTHKDYNSP TAKRRKKGGN IELSPVERST NDSRIVVHTQ
301: TLFDIVNDGY RWRKYGQKSV KGSPYPRSYY RCSSPGCPVK KHVERSSHDT KLLITTYEGK HDHDMPPGRV VTHNNMLDSE VDDKEGDANK TPQSSTLQSI
401: TKDQHVEDHL RKKTKTNGFE KSLDQGPVLD EKLKEEIKER SDANKDHAAN HAKPEAKSDD KTTVCQEKAV GTLESEEQKP KTEPAQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)