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AT2G04780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.500
plasma membrane 0.500
ASURE: extracellular,plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 16618929
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : plasma membrane 16618929
TAIR : plasma membrane 12805588
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24393051 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16635983 (2006): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:14517339 (2003): plasma membrane
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FASCICLIN-like arabinoogalactan 7
Curator
Summary (TAIR10)
fasciclin-like arabinogalactan-protein 7 (Fla7)
Computational
Description (TAIR10)
FASCICLIN-like arabinoogalactan 7 (FLA7); LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan 6 (TAIR:AT2G20520.1); Has 713 Blast hits to 707 proteins in 79 species: Archae - 4; Bacteria - 65; Metazoa - 1; Fungi - 0; Plants - 633; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJCTeggNOG:ENOG410YHS4EMBL:AC006955EMBL:AF083754EMBL:AF333973EMBL:AY084541EMBL:AY094449
EMBL:BT001123EMBL:CP002685EnsemblPlants:AT2G04780EnsemblPlants:AT2G04780.1EnsemblPlants:AT2G04780.2entrez:815021Gene3D:2.30.180.10
GeneID:815021Genevisible:Q9SJ81GO:GO:0005886GO:GO:0016020GO:GO:0031225GO:GO:0046658Gramene:AT2G04780.1
Gramene:AT2G04780.2hmmpanther:PTHR32077hmmpanther:PTHR32077:SF3HOGENOM:HOG000029116InParanoid:Q9SJ81InterPro:IPR000782KEGG:ath:AT2G04780
OMA:VCSASAKPaxDb:Q9SJ81Pfam:PF02469Pfam:Q9SJ81Pfscan:PS50213PhylomeDB:Q9SJ81PIR:D84461
PRIDE:Q9SJ81PRO:PR:Q9SJ81PROSITE:PS50213ProteinModelPortal:Q9SJ81Proteomes:UP000006548RefSeq:NP_565313.1RefSeq:NP_849935.1
SMART:SM00554STRING:3702.AT2G04780.1SUPFAM:SSF82153TAIR:AT2G04780tair10-symbols:FLA7UniGene:At.14215UniProt:Q9SJ81
Coordinates (TAIR10) chr2:+:1677488..1678252
Molecular Weight (calculated) 26847.20 Da
IEP (calculated) 6.52
GRAVY (calculated) 0.16
Length 254 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKMQLSIFI AVVALIVCSA SAKTASPPAP VLPPTPAPAP APENVNLTEL LSVAGPFHTF LDYLLSTGVI ETFQNQANNT EEGITIFVPK DDAFKAQKNP
101: PLSNLTKDQL KQLVLFHALP HYYSLSEFKN LSQSGPVSTF AGGQYSLKFT DVSGTVRIDS LWTRTKVSSS VFSTDPVAVY QVNRVLLPEA IFGTDVPPMP
201: APAPAPIVSA PSDSPSVADS EGASSPKSSH KNSGQKLLLA PISMVISGLV ALFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)