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AT2G04680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.907
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G37620.1); Has 1809 Blast hits to 673 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 5; Plants - 1734; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J8VYeggNOG:ENOG41119PWEMBL:AC006955EMBL:AY773838
EMBL:CP002685EnsemblPlants:AT2G04680EnsemblPlants:AT2G04680.1entrez:815011
GeneID:815011GO:GO:0008270GO:GO:0047134Gramene:AT2G04680.1
hmmpanther:PTHR32410hmmpanther:PTHR32410:SF152InterPro:IPR001965InterPro:IPR004146
InterPro:IPR011424KEGG:ath:AT2G04680OMA:CLLCEEEPfam:PF03107
Pfam:PF07649PhylomeDB:Q9SJ91PIR:B84460Proteomes:UP000006548
RefSeq:NP_178545.1SMART:SM00249SMR:Q9SJ91SUPFAM:SSF57889
TAIR:AT2G04680UniGene:At.41280UniProt:Q9SJ91
Coordinates (TAIR10) chr2:+:1640188..1642161
Molecular Weight (calculated) 75752.50 Da
IEP (calculated) 7.15
GRAVY (calculated) -0.34
Length 657 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIVEVSPIH KHPLLPITRF SREHCKCNVC GSVGYIYGGY CCNEVGCESM FHKECVESLS EIKHTSHPDH PLKLLISDKA SFCSRCEGRF ENGYICSICD
101: FKLDFRCAKG PAPLLILEKS NLHEHLLEFF VGWHSWKGHR ECKACGGAGF RGYRWYGCYQ CDTLFHGECA EFFPEAKHTS HPQHTLKHIT SEEAPDYADN
201: KCLLCEEEFD QQHPKIHHCD VCNFTICRAC MKNAPPVRIE SLTTHEHQLH LVPRRIDFTC NACGTLGDRS PYFCLQCNFM IHRQCIDLPR VININRHDHR
301: ISYTRRLGHG EWKCKVCRKK VDGFYGAYTC LKCPSFVVHS LCATRNDVWD MIELEGMQEE EEIAPYEMID ANTIKHFSHD HNLQINNDGH GRIQPENIVC
401: EACVFQILSE PFYSCNQCSF ILHEKCANHP RKKRHVCNNT SFILFTDSCN KANASCGLCK QHFTGFRYES GPYVTIDVRC AAILDTIEHG SHQHPLYYYT
501: TFDWKPCSRC REEGAVLFRC DECDYILDGN CALFPKKVMR NRYDDHLLFL SFGDKNVSGD YWCEACETKV NPKEWFYTCN DCGTILHISC VVGDFSYIMP
601: GSHITTWRAN VVSNTSICRP VCYMCNSRCK LPSVLKLSDT KVDVYLCSFK CAYFIRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)