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AT2G04540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Beta-ketoacyl synthase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Beta-ketoacyl synthase; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, fatty acid synthase activity, catalytic activity; INVOLVED IN: biosynthetic process, fatty acid biosynthetic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-ketoacyl synthase (InterPro:IPR000794), Thiolase-like (InterPro:IPR016039), Beta-ketoacyl synthase, C-terminal (InterPro:IPR014031), 3-oxoacyl-[acyl-carrier-protein] synthase 2 (InterPro:IPR017568), Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030), Thiolase-like, subgroup (InterPro:IPR016038), Beta-ketoacyl synthase, active site (InterPro:IPR018201); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-acyl carrier protein synthase I (TAIR:AT5G46290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G04540-MONOMERBioCyc:MetaCyc:AT2G04540-MONOMERBRENDA:2.3.1.41EC:2.3.1.41
eggNOG:COG0304eggNOG:KOG1394EMBL:AB073746EMBL:AC006951
EMBL:AY099587EMBL:AY128832EMBL:CP002685EnsemblPlants:AT2G04540
EnsemblPlants:AT2G04540.1entrez:814996EvolutionaryTrace:Q8L3X9Gene3D:3.40.47.10
GeneID:814996Genevisible:Q8L3X9GO:GO:0004315GO:GO:0005739
GO:GO:0006633Gramene:AT2G04540.1gramene_pathway:2.3.1.41gramene_pathway:FASYN-ELONG-PWY
gramene_pathway:PWY-5971gramene_pathway:PWY-5989hmmpanther:PTHR11712hmmpanther:PTHR11712:SF275
HOGENOM:HOG000060166InParanoid:Q8L3X9InterPro:IPR014030InterPro:IPR014031
InterPro:IPR016039InterPro:IPR017568InterPro:IPR018201InterPro:IPR020841
KEGG:ath:AT2G04540KO:K09458OMA:AMGARAMPaxDb:Q8L3X9
PDB:1W0IPDB:2IX4PDBsum:1W0IPDBsum:2IX4
Pfam:PF00109Pfam:PF02801Pfam:Q8L3X9PhylomeDB:Q8L3X9
PIR:F84458PIRSF:PIRSF000447PRIDE:Q8L3X9PRO:PR:Q8L3X9
PROSITE:PS00606ProteinModelPortal:Q8L3X9Proteomes:UP000006548RefSeq:NP_178533.2
scanprosite:PS00606SMART:SM00825SMR:Q8L3X9STRING:3702.AT2G04540.1
SUPFAM:SSF53901TAIR:AT2G04540TIGRfam:TIGR03150TIGRFAMs:TIGR03150
UniGene:At.41299UniPathway:UPA00094UniProt:Q8L3X9
Coordinates (TAIR10) chr2:-:1581521..1584635
Molecular Weight (calculated) 49381.90 Da
IEP (calculated) 7.38
GRAVY (calculated) -0.08
Length 461 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSNLRRHL SASRLRLNRF ISTSSSYHSH RRVVVTGLGM VTPLGRGVET TWRRLIDGEC GIRGLTLDDL KMKSFDEETK LYTFDQLSSK VAAFVPYGSN
101: PGEFDEALWL NSKAVANFIG YAVCAADEAL RDAEWLPTEE EEKERTGVSI GGGIGSICDI VEAAQLICEK RLRRLSPFFI PKILVNMASG HVSMKYGFQG
201: PNHAAVTACA TGAHSIGDAT RMIQFGDADV MVAGGTESSI DALSVAGFSR SRALSTKFNS SPQEASRPFD CDRDGFVIGE GSGVIVLEEY EHAKRRGAKI
301: YAELCGYGMS GDAHHITQPP EDGKGAVLAM TRALRQSGLC PNQIDYVNAH ATSTPIGDAV EARAIKTVFS EHATSGTLAF SSTKGATGHL LGAAGAVEAI
401: FSILAIHHGV APMTLNVKNP DPIFDKRFMP LTTSKKMLVR TAMSNSFGFG GTNASLLFAS I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)