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AT2G04390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Ribosomal S17 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal S17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, nucleolus, plasma membrane; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: Ribosomal S17 family protein (TAIR:AT5G04800.4); Has 1004 Blast hits to 1004 proteins in 349 species: Archae - 194; Bacteria - 0; Metazoa - 361; Fungi - 144; Plants - 127; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).
Protein Annotations
BioGrid:379eggNOG:COG1383eggNOG:KOG0187EMBL:AC006951EMBL:AF419568EMBL:AY079105EMBL:AY088578
EMBL:CP002685EMBL:Z35178EnsemblPlants:AT2G04390EnsemblPlants:AT2G04390.1entrez:814978Gene3D:1.10.60.20GeneID:814978
Genevisible:P49205GO:GO:0003735GO:GO:0005730GO:GO:0005829GO:GO:0005886GO:GO:0006412GO:GO:0022627
Gramene:AT2G04390.1HAMAP:MF_00511hmmpanther:PTHR10732HOGENOM:HOG000227166InParanoid:P49205IntAct:P49205InterPro:IPR001210
InterPro:IPR018273iPTMnet:P49205KEGG:ath:AT2G04390KO:K02962OMA:DEIPRECPANTHER:PTHR10732PaxDb:P49205
Pfam:P49205Pfam:PF00833PhylomeDB:P49205PIR:A84457PRIDE:P49205PRO:PR:P49205PROSITE:PS00712
ProteinModelPortal:P49205Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702
Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_178520.1scanprosite:PS00712SMR:P49205STRING:3702.AT2G04390.1
SUPFAM:0049231SUPFAM:SSF116820TAIR:AT2G04390UniGene:At.19071UniGene:At.36448UniGene:At.63393UniProt:P49205
Coordinates (TAIR10) chr2:+:1527911..1528336
Molecular Weight (calculated) 16047.70 Da
IEP (calculated) 10.72
GRAVY (calculated) -0.58
Length 141 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTLGISAV DPQQAMAPIP AFGGGRAPRR Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)