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AT2G04350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22430844 (2012): Golgi
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AMP-dependent synthetase and ligase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
long-chain acyl-CoA synthetase 8 (LACS8); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity, catalytic activity; INVOLVED IN: fatty acid biosynthetic process, metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: long chain acyl-CoA synthetase 9 (TAIR:AT1G77590.1); Has 68120 Blast hits to 56487 proteins in 3592 species: Archae - 1085; Bacteria - 46156; Metazoa - 2682; Fungi - 3484; Plants - 2089; Viruses - 2; Other Eukaryotes - 12622 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G04350-MONOMERBioCyc:ARA:GQT-1997-MONOMERBioCyc:MetaCyc:AT2G04350-MONOMERBioGrid:375EC:6.2.1.3eggNOG:COG1022eggNOG:KOG1180
EMBL:AC006951EMBL:AC007213EMBL:AF503758EMBL:AY052664EMBL:BT002288EMBL:CP002685EnsemblPlants:AT2G04350
EnsemblPlants:AT2G04350.1EnsemblPlants:AT2G04350.2entrez:814974GeneID:814974Genevisible:Q9SJD4GO:GO:0001676GO:GO:0004467
GO:GO:0005524GO:GO:0005783GO:GO:0005794GO:GO:0006631GO:GO:0009941Gramene:AT2G04350.1Gramene:AT2G04350.2
gramene_pathway:6.2.1.3gramene_pathway:PWY-5143gramene_pathway:PWY-5995gramene_plant_reactome:1119623gramene_plant_reactome:6875440hmmpanther:PTHR24096hmmpanther:PTHR24096:SF219
HOGENOM:HOG000159459InParanoid:Q9SJD4InterPro:IPR000873InterPro:IPR020845KEGG:ath:AT2G04350KO:K01897OMA:KARPVNN
PaxDb:Q9SJD4Pfam:PF00501Pfam:Q9SJD4PhylomeDB:Q9SJD4PIR:E84456PRIDE:Q9SJD4PRO:PR:Q9SJD4
PROSITE:PS00455ProteinModelPortal:Q9SJD4Proteomes:UP000006548Reactome:R-ATH-75876RefSeq:NP_178516.1RefSeq:NP_849934.1SABIO-RK:Q9SJD4
scanprosite:PS00455SMR:Q9SJD4STRING:3702.AT2G04350.1SUPFAM:SSF56801TAIR:AT2G04350tair10-symbols:LACS8TMHMM:TMhelix
UniGene:At.21686UniPathway:UPA00199UniProt:Q9SJD4
Coordinates (TAIR10) chr2:+:1516086..1519178
Molecular Weight (calculated) 78347.50 Da
IEP (calculated) 7.70
GRAVY (calculated) -0.11
Length 720 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDSGVNPMD SPSKGSDFGV YGIIGGGIVA LLVPVLLSVV LNGTKKGKKR GVPIKVGGEE GYTMRHARAP ELVDVPWEGA ATMPALFEQS CKKYSKDRLL
101: GTREFIDKEF ITASDGRKFE KLHLGEYKWQ SYGEVFERVC NFASGLVNVG HNVDDRVAIF SDTRAEWFIA FQGCFRQSIT VVTIYASLGE EALIYSLNET
201: RVSTLICDSK QLKKLSAIQS SLKTVKNIIY IEEDGVDVAS SDVNSMGDIT VSSISEVEKL GQKNAVQPIL PSKNGVAVIM FTSGSTGLPK GVMITHGNLV
301: ATAAGVMKVV PKLDKNDTYI AYLPLAHVFE LEAEIVVFTS GSAIGYGSAM TLTDTSNKVK KGTKGDVSAL KPTIMTAVPA ILDRVREGVL KKVEEKGGMA
401: KTLFDFAYKR RLAAVDGSWF GAWGLEKMLW DALVFKKIRA VLGGHIRFML VGGAPLSPDS QRFINICMGS PIGQGYGLTE TCAGATFSEW DDPAVGRVGP
501: PLPCGYVKLV SWEEGGYRIS DKPMPRGEIV VGGNSVTAGY FNNQEKTDEV YKVDEKGTRW FYTGDIGRFH PDGCLEVIDR KKDIVKLQHG EYVSLGKVEA
601: ALGSSNYVDN IMVHADPINS YCVALVVPSR GALEKWAEEA GVKHSEFAEL CEKGEAVKEV QQSLTKAGKA AKLEKFELPA KIKLLSEPWT PESGLVTAAL
701: KIKREQIKSK FKDELSKLYA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)