AT2G04270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNAse E/G-like | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RNAse E/G-like (RNEE/G); FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Carbohydrate-binding-like fold (InterPro:IPR013784), Ribonuclease E/G (InterPro:IPR004659), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Immunoglobulin-like fold (InterPro:IPR013783), RNA-binding protein AU-1/Ribonuclease E/G (InterPro:IPR019307); Has 10085 Blast hits to 8560 proteins in 1893 species: Archae - 5; Bacteria - 6357; Metazoa - 7; Fungi - 75; Plants - 95; Viruses - 0; Other Eukaryotes - 3546 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:1474961..1480014 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110912.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.71 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||
| Length | 996 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDVTEVPWRR LPQFSVSSRA SWLVSSGFPL SSYMFSHVER GKTFRLTLCF GVSRLRPRSA IVSAQQEQPP SRLKGLCEVV WIVEADLAAN EHLYVTGDPS 101: TLGSWEPDCA ISMYPTENDN EWEAKVKIAS GVNFRYNYLL KAGYGSSSDV IWRPGPQFSL SVPSSVNQDR KIIIRDSWMS MSISSKSQES YGWGSWIDDA 201: YLFPNCVTPA QSEDECTSAD SAIEVPRTHL NDKQVGAESF LCDELAAFSS ENSNLSALFS DNYQPIEEPW LIQESITLQH ERNMQTDSEQ DVESCDDNEN 301: NLNTDEQNHQ LTETLLPDGG FFQSESIATT ILINSSICTV QRIAVLEGGK LVELLLEPVK TNVQCDSVYL GVITKFVPHM GGAFVNIGSA RHSFMDIKSN 401: REPFIFPPFC DGSKKQAADG SPILSMNDIP APHEIEHASY DFEASSLLDI DSNDPGESFH DDDDEHENDE YHVSDHLAGL VNGTVVNHGA VEVGSENGHI 501: PMERGHSADS LDSNASVAKA SKVMSSKDNK WIQVRKGTKI IVQVVKEGLG TKGPTLTAYP KLRSRFWVLL TRCKRIGVSK KISGVERTRL KVIAKTLQPQ 601: GFGLTVRTVA AGHSLEELQK DLDGLLLTWK NITDEAKSAA LAADEGVEGA IPALLHRAMG QTLSVVQDYF NDKVEKMVVD SPRTYHEVTH YLQDMAPDLC 701: NRVELHDKGI PLFDLYEIEE EIEGILSKRV PLSNGGSLVI EQTEALVSID VNGGHGMFGQ GNSQEKAILE VNLAAARQIA REIRLRDIGG IIVVDFIDMA 801: DESNKRLVYE EVKKAVERDR SLVKVSELSR HGLMEITRKR VRPSVTFMIS EPCSCCHATG RVEALETTFS KIEQEICRQL AKMEKRGDLE NPKSWPRFIL 901: RVDSHMSSFL TTGKRTRLAI LSSSLKVWIL LKVARHFTRG TFEVKPFMDE KTVNERQHQV AISLLKKADA IADSSGKKKL TLIPIKKEKT SGKQRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)