suba logo
AT2G04240.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism.
Computational
Description (TAIR10)
XERICO; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: brassinosteroid-responsive RING-H2 (TAIR:AT3G61460.1); Has 7967 Blast hits to 7952 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 1949; Fungi - 661; Plants - 4072; Viruses - 19; Other Eukaryotes - 1266 (source: NCBI BLink).
Protein Annotations
BioGrid:363EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC007213EMBL:AF324691EMBL:AF326867
EMBL:AF339689EMBL:CP002685EnsemblPlants:AT2G04240EnsemblPlants:AT2G04240.1EnsemblPlants:AT2G04240.2entrez:814962Gene3D:3.30.40.10
GeneID:814962Genevisible:Q9SI09GO:GO:0006970GO:GO:0008270GO:GO:0009651GO:GO:0009687GO:GO:0009688
GO:GO:0009739GO:GO:0010200GO:GO:0016021GO:GO:0016567GO:GO:0016874Gramene:AT2G04240.1Gramene:AT2G04240.2
hmmpanther:PTHR14155hmmpanther:PTHR14155:SF175HOGENOM:HOG000242879InParanoid:Q9SI09InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT2G04240
KO:K16285OMA:FHKTCLEPaxDb:Q9SI09Pfam:PF13639Pfam:Q9SI09Pfscan:PS50089PhylomeDB:Q9SI09
PIR:E84455PRIDE:Q9SI09PRO:PR:Q9SI09PROSITE:PS50089ProteinModelPortal:Q9SI09Proteomes:UP000006548RefSeq:NP_178507.1
RefSeq:NP_973416.1SMART:SM00184SMR:Q9SI09STRING:3702.AT2G04240.1SUPFAM:SSF57850TAIR:AT2G04240tair10-symbols:XERICO
UniGene:At.14524UniPathway:UPA00143UniProt:Q9SI09
Coordinates (TAIR10) chr2:-:1461816..1462304
Molecular Weight (calculated) 17928.50 Da
IEP (calculated) 6.71
GRAVY (calculated) -0.03
Length 162 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLSSLPGPS EGMLCVILVN TALSISIVKG IVRSFLGIVG ISLSPSSSSP SSVTVSSENS STSESFDFRV CQPESYLEEF RNRTPTLRFE SLCRCKKQAD
101: NECSVCLSKF QGDSEINKLK CGHLFHKTCL EKWIDYWNIT CPLCRTPLVV VPEDHQLSSN VW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)