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AT2G04230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FBD, F-box and Leucine Rich Repeat domains containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FBD, F-box and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT3G49030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:361eggNOG:ENOG410JBX1eggNOG:ENOG410ZC2NEMBL:AC007213
EMBL:AK176557EMBL:BT012570EMBL:CP002685EnsemblPlants:AT2G04230
EnsemblPlants:AT2G04230.1entrez:814960Gene3D:3.80.10.10GeneID:814960
Genevisible:Q6NKX3Gramene:AT2G04230.1hmmpanther:PTHR32212hmmpanther:PTHR32212:SF126
HOGENOM:HOG000220924InParanoid:Q6NKX3IntAct:Q6NKX3InterPro:IPR001810
InterPro:IPR006566InterPro:IPR013101InterPro:IPR032675KEGG:ath:AT2G04230
OMA:KDEESVCPaxDb:Q6NKX3Pfam:PF00646Pfam:PF07723
Pfam:PF08387Pfam:Q6NKX3Pfscan:PS50181PhylomeDB:Q6NKX3
PIR:D84455PRIDE:Q6NKX3PRO:PR:Q6NKX3PROSITE:PS50181
ProteinModelPortal:Q6NKX3Proteomes:UP000006548RefSeq:NP_178506.3SMART:SM00256
SMART:SM00579SMR:Q6NKX3SUPFAM:SSF52058SUPFAM:SSF81383
TAIR:AT2G04230UniGene:At.41333UniProt:Q6NKX3
Coordinates (TAIR10) chr2:-:1447025..1448678
Molecular Weight (calculated) 51311.70 Da
IEP (calculated) 5.16
GRAVY (calculated) -0.21
Length 448 amino acids
Sequence (TAIR10)
(BLAST)
001: MEQKFKTDSM NEDRISDLPD ALLLQILSSL PTENAIATSV LSKRWRSLWT MLPKLKFDSN FNPVFDDDNI DPTMFSENVY KTLSLHKAPV LESLHLSFEG
101: RTDCLHVGIW IATAFARGVR KLVLDSFYQE DQTVTLPSVL FSYNDSLEIL KLKCAIDLDF PSRVCLKSLR KLYLDQVHFK DEESVCNLLC GCPSLQDLVV
201: HRYSNADVAT FTIASPSLQR LTIEDLRQEG GYGNGSYVIN APGLKYLNIN GVIDIESCLI DKALELEEAK ISNVSGITNE NILESLTSAK RLILHLSPLE
301: VKVPTGKIFD QLGCLELLTH EREWWNLLSI MLDSSPKLQI LKLTDVYLHD NKTNPDERKW NPPKCAPECL LFHLETFLWI GYEWQRGDEK EVATYILENA
401: RRLKKATFST KRIGREKLED FEKRREMLNE LAIVLWDSNS CHLVFEST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)