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AT2G04060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.393
plasma membrane 0.374
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyl hydrolase family 35 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycosyl hydrolase family 35 protein; FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 15 (TAIR:AT1G31740.1); Has 587 Blast hits to 558 proteins in 54 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 0; Plants - 572; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G04060-MONOMERCAZy:GH35eggNOG:COG1874eggNOG:KOG0496EMBL:AC007178EMBL:CP002685EnsemblPlants:AT2G04060
EnsemblPlants:AT2G04060.1entrez:814940Gene3D:3.20.20.80GeneID:814940GO:GO:0004553GO:GO:0005975GO:GO:0016021
Gramene:AT2G04060.1hmmpanther:PTHR23421hmmpanther:PTHR23421:SF49InterPro:IPR001944InterPro:IPR008979InterPro:IPR013781InterPro:IPR017853
InterPro:IPR031330KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23KEGG:00604+3.2.1.23KEGG:ath:AT2G04060
PANTHER:PTHR23421Pfam:PF01301PhylomeDB:Q8S8A7PRINTS:PR00742Proteomes:UP000006548RefSeq:NP_178493.1SMR:Q8S8A7
STRING:3702.AT2G04060.1SUPFAM:SSF49785SUPFAM:SSF51445TAIR:AT2G04060TMHMM:TMhelixUniGene:At.52628UniProt:Q8S8A7
Coordinates (TAIR10) chr2:-:1342137..1345164
Molecular Weight (calculated) 52853.50 Da
IEP (calculated) 7.17
GRAVY (calculated) -0.03
Length 469 amino acids
Sequence (TAIR10)
(BLAST)
001: MTNSLDVGVP WIMCQQDDAP QPMYHGHTNF DRTAGGPFIT TTYDYDAPLD EFGNLNQPKY GHLKQLHDVF HAMEKTLTYG NISTADFGNL VMTTVYQTEE
101: GSSCFIGNVN AKINFQGTSY DVPAWYVSIL PDCKTESYNT AKRMKLRTSL RFKNVSNDES DFLWYMTTVN LKEQDPAWGK NMSLRINSTA HVLHGFVNGQ
201: HTGNYRVENG KFHYVFEQDA KFNPGVNVIT LLSVTVDLPN YGAFFENVPA GITGPVFIIG RNGDETVVKY LSTHNGATKL TIFKAPLGSE PVVVDLLGFG
301: KGKASINENY TGRYWPDPPV LLRFSTHLLH NWVLASSPYR YVMSELISQY AKNLAIILKH LSNITLARTR VQALSRVVLF GPVRFTTLTT FTTPLGLLTM
401: AICSSIDSSL EELSIIFDLT CTKMLYSFWL KALKELLSIK PIDPFIYLFI YLMLALWNAP YGCIVNFWI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)