AT2G04060.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 0.393 plasma membrane 0.374 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : glycosyl hydrolase family 35 protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
glycosyl hydrolase family 35 protein; FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 15 (TAIR:AT1G31740.1); Has 587 Blast hits to 558 proteins in 54 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 0; Plants - 572; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:1342137..1345164 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 52853.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.17 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 469 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MTNSLDVGVP WIMCQQDDAP QPMYHGHTNF DRTAGGPFIT TTYDYDAPLD EFGNLNQPKY GHLKQLHDVF HAMEKTLTYG NISTADFGNL VMTTVYQTEE 101: GSSCFIGNVN AKINFQGTSY DVPAWYVSIL PDCKTESYNT AKRMKLRTSL RFKNVSNDES DFLWYMTTVN LKEQDPAWGK NMSLRINSTA HVLHGFVNGQ 201: HTGNYRVENG KFHYVFEQDA KFNPGVNVIT LLSVTVDLPN YGAFFENVPA GITGPVFIIG RNGDETVVKY LSTHNGATKL TIFKAPLGSE PVVVDLLGFG 301: KGKASINENY TGRYWPDPPV LLRFSTHLLH NWVLASSPYR YVMSELISQY AKNLAIILKH LSNITLARTR VQALSRVVLF GPVRFTTLTT FTTPLGLLTM 401: AICSSIDSSL EELSIIFDLT CTKMLYSFWL KALKELLSIK PIDPFIYLFI YLMLALWNAP YGCIVNFWI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)