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AT2G04039.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 159 Blast hits to 159 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYTAeggNOG:ENOG4111V57EMBL:AC007178EMBL:AY058049EMBL:AY086868EMBL:AY090294EMBL:CP002685
EnsemblPlants:AT2G04039EnsemblPlants:AT2G04039.1entrez:814937ExpressionAtlas:Q93Z84GeneID:814937Gramene:AT2G04039.1hmmpanther:PTHR36341
hmmpanther:PTHR36341:SF2HOGENOM:HOG000242439InterPro:IPR021374Pfam:PF11210PhylomeDB:Q93Z84Proteomes:UP000006548RefSeq:NP_565308.1
STRING:3702.AT2G04039.3TAIR:AT2G04039UniGene:At.1794UniGene:At.26662UniGene:At.41354UniProt:Q93Z84
Coordinates (TAIR10) chr2:+:1333464..1334438
Molecular Weight (calculated) 21417.50 Da
IEP (calculated) 6.54
GRAVY (calculated) -0.21
Length 199 amino acids
Sequence (TAIR10)
(BLAST)
001: MATIAGGSFG VPSSRISITT PTLSSSSLLP PLTLQSGTRK DNLLRCALQE SSTSAVATEK KNKEEGEEST VAVPAKKPKP AAKAAAVAKP LRQMMEEDVI
101: PPLQAILESQ DDISDIDLSF QDDKLEGFFL KKSIPYSFWA FFPTGNLTGA KGFSISSHGS GPSTVEPFLV DERKPTANHV VFWVEKRLAA QGIIPVWNQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)