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AT2G04030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): plastid
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:17137349 (2006): mitochondrion
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:12938931 (2003): plastid
  • PMID:11743115 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone protein htpG family protein
Curator
Summary (TAIR10)
Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR.
Computational
Description (TAIR10)
CR88; FUNCTIONS IN: ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, plasma membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone protein htpG (InterPro:IPR001404), Heat shock protein Hsp90, conserved site (InterPro:IPR019805), Heat shock protein Hsp90, C-terminal (InterPro:IPR020576), Heat shock protein Hsp90, N-terminal (InterPro:IPR020575), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: HEAT SHOCK PROTEIN 89.1 (TAIR:AT3G07770.1); Has 8928 Blast hits to 8878 proteins in 2458 species: Archae - 4; Bacteria - 3413; Metazoa - 2083; Fungi - 313; Plants - 465; Viruses - 0; Other Eukaryotes - 2650 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0326eggNOG:KOG0019EMBL:AC007167EMBL:AF436826EMBL:AK229707EMBL:AK229761EMBL:AY053403
EMBL:AY094422EMBL:BT002234EMBL:CP002685EnsemblPlants:AT2G04030EnsemblPlants:AT2G04030.1EnsemblPlants:AT2G04030.2entrez:814930
ExpressionAtlas:Q9SIF2Gene3D:3.30.565.10GeneID:814930Genevisible:Q9SIF2GO:GO:0005524GO:GO:0005739GO:GO:0005774
GO:GO:0006457GO:GO:0009408GO:GO:0009414GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009651
GO:GO:0009704GO:GO:0009941GO:GO:0010157GO:GO:0045037HAMAP:MF_00505hmmpanther:PTHR11528hmmpanther:PTHR11528:SF41
IntAct:Q9SIF2InterPro:IPR001404InterPro:IPR003594InterPro:IPR019805InterPro:IPR020568InterPro:IPR020575KEGG:ath:AT2G04030
KO:K09487OMA:DEVAMANPANTHER:PTHR11528PaxDb:Q9SIF2Pfam:PF00183Pfam:PF02518PhylomeDB:Q9SIF2
PIR:H84453PIRSF:PIRSF002583PRINTS:PR00775ProMEX:Q9SIF2PROSITE:PS00298ProteinModelPortal:Q9SIF2Proteomes:UP000006548
RefSeq:NP_178487.1RefSeq:NP_849932.1scanprosite:PS00298SMART:SM00387SMR:Q9SIF2STRING:3702.AT2G04030.1SUPFAM:0043579
SUPFAM:SSF54211SUPFAM:SSF55874SwissPalm:Q9SIF2TAIR:AT2G04030tair10-symbols:AtHsp90.5tair10-symbols:CR88tair10-symbols:EMB1956
tair10-symbols:Hsp88.1tair10-symbols:HSP90.5UniGene:At.1835UniProt:Q9SIF2
Coordinates (TAIR10) chr2:+:1281983..1285909
Molecular Weight (calculated) 88667.60 Da
IEP (calculated) 4.65
GRAVY (calculated) -0.55
Length 780 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPALSRSLY TSPLTSVPIT PVSSRLSHLR SSFLPHGGAL RTGVSCSWNL EKRCNRFAVK CDAAVAEKET TEEGSGEKFE YQAEVSRLLD LIVHSLYSHK
101: EVFLRELVSN ASDALDKLRF LSVTEPSLLG DGGDLEIRIK PDPDNGTITI TDTGIGMTKE ELIDCLGTIA QSGTSKFLKA LKENKDLGAD NGLIGQFGVG
201: FYSAFLVAEK VVVSTKSPKS DKQYVWESVA DSSSYLIREE TDPDNILRRG TQITLYLRED DKYEFAESTR IKNLVKNYSQ FVGFPIYTWQ EKSRTIEVEE
301: DEPVKEGEEG EPKKKKTTKT EKYWDWELAN ETKPLWMRNS KEVEKGEYNE FYKKAFNEFL DPLAHTHFTT EGEVEFRSIL YIPGMGPLNN EDVTNPKTKN
401: IRLYVKRVFI SDDFDGELFP RYLSFVKGVV DSDDLPLNVS REILQESRIV RIMRKRLIRK TFDMIQEISE SENKEDYKKF WENFGRFLKL GCIEDTGNHK
501: RITPLLRFFS SKNEEELTSL DDYIENMGEN QKAIYYLATD SLKSAKSAPF LEKLIQKDIE VLYLVEPIDE VAIQNLQTYK EKKFVDISKE DLELGDEDEV
601: KDREAKQEFN LLCDWIKQQL GDKVAKVQVS NRLSSSPCVL VSGKFGWSAN MERLMKAQAL GDTSSLEFMR GRRILEINPD HPIIKDLNAA CKNAPESTEA
701: TRVVDLLYDT AIISSGFTPD SPAELGNKIY EMMAMAVGGR WGRVEEEEES STVNEGDDKS GETEVVEPSE VRAESDPWQD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)