AT2G03980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G04020.1); Has 3198 Blast hits to 3166 proteins in 143 species: Archae - 0; Bacteria - 189; Metazoa - 0; Fungi - 13; Plants - 2979; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:1260907..1262408 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40760.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.64 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||
| Length | 367 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLHSCLNSY FLLLLLCLLN ITTINSTKPL EQETVLFGGN FPAFYVIGDS LVDSGNNNHL TTMVKSNFPP YGSDFEGGKA TGRFSNGKTI ADYIAIYYGL 101: PLVPAYLGLS QEEKNSISTG INYASAGCGI LPQTGRQIGT CLSLSVQVDM FQETITNNLK KNFKKSELRE HLAESLFMIA IGVNDYTFLF NETTDANEFA 201: NKLLHDYLLQ IERLHKLGAR KFFINNIKPL GCYPNVVAKT VPRGSCNDAL NFAVSIFNTK LRKSLSRMTQ KFIKTSFLYS DYYNYMLGLR GPSSNQVGSS 301: LLNVTSPCCP NVYDGGQLTS CKPGSIACKA PDTHIFFDPF HPTQLANYMY AIACFHERSI CHVILED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)