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AT2G03830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).
Computational
Description (TAIR10)
root meristem growth factor 8 (RGF8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, root, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUZDeggNOG:ENOG41106DQEMBL:AC007196EMBL:AY219139
EMBL:AY649256EMBL:CP002685EnsemblPlants:AT2G03830EnsemblPlants:AT2G03830.1
entrez:814909GeneID:814909Genevisible:Q9SI57GO:GO:0005576
GO:GO:0030154Gramene:AT2G03830.1HOGENOM:HOG000153474InParanoid:Q9SI57
KEGG:ath:AT2G03830ncoils:CoilOMA:YRTFRRRPaxDb:Q9SI57
Pfam:Q9SI57PIR:G84452PRIDE:Q9SI57PRO:PR:Q9SI57
Proteomes:UP000006548RefSeq:NP_178477.1STRING:3702.AT2G03830.1TAIR:AT2G03830
tair10-symbols:RGF8UniGene:At.41369UniProt:Q9SI57
Coordinates (TAIR10) chr2:+:1171226..1172147
Molecular Weight (calculated) 13970.20 Da
IEP (calculated) 10.44
GRAVY (calculated) -0.45
Length 123 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLIRVTLFL CALAILLLVT PTSSLQLKHP YSSPSQGLSK KIVTKMATRK LMIISSEYVM TSTSHEGSSE QLRVTSSGKS KDEEKKLSEE EEEKKALAKY
101: LSMDYRTFRR RRPVHNKALP LDP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)