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AT2G03640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.980
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT1G13730.1); Has 3027 Blast hits to 2983 proteins in 314 species: Archae - 0; Bacteria - 115; Metazoa - 1665; Fungi - 480; Plants - 492; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).
Protein Annotations
EMBL:AK119071EMBL:BT005362EMBL:CP002685EnsemblPlants:AT2G03640
EnsemblPlants:AT2G03640.1entrez:814893ExpressionAtlas:Q8GW56Gene3D:3.10.450.50
Gene3D:3.30.70.330GeneID:814893GO:GO:0000166GO:GO:0003676
GO:GO:0005622GO:GO:0006810Gramene:AT2G03640.1hmmpanther:PTHR10693
hmmpanther:PTHR10693:SF27HOGENOM:HOG000239086IntAct:Q8GW56InterPro:IPR000504
InterPro:IPR002075InterPro:IPR012677InterPro:IPR018222InterPro:IPR032710
Pfam:PF00076Pfam:PF02136Pfscan:PS50102Pfscan:PS50177
PhylomeDB:Q8GW56PROSITE:PS50102PROSITE:PS50177Proteomes:UP000006548
RefSeq:NP_178462.3SMART:SM00360SMR:Q8GW56SUPFAM:SSF54427
SUPFAM:SSF54928TAIR:AT2G03640UniGene:At.43900UniProt:Q8GW56
Coordinates (TAIR10) chr2:-:1104525..1106418
Molecular Weight (calculated) 46133.90 Da
IEP (calculated) 9.38
GRAVY (calculated) -0.69
Length 422 amino acids
Sequence (TAIR10)
(BLAST)
001: MTPESNAPSV DPQFVGNGFV QEYYNHLYDS TSEVHKFYLE DSMISRPGLD GEIVTIKSLK GINDQIMSID YKSSRIEILT ADSQSTLKNG VVTLVTGLVI
101: GNDGGRRKFS QSFFLVSRNG SYFVLNDTFR YVSDEFVEPE ATKEVEESQS TNAITEPANE SVEAVIVPTE AKTTVTKPAS AIPNGHAKVP EEKVVNENSS
201: LPKAAEAKLQ EEVPKKSFAL IVQSLAQSAG TLQVKASPVK RKPVEKPVAA PERKAPSPIR KQASAESIKP QAQGSSIFVA NLPMDATIEQ LYETFKSFGA
301: IRKDGIQVRS YPEKKNCIGF VAFENGEAVK NVFQAHRESP IRIGNRRASI EEKRGGNNQN GNRVSTRNNS GYKNEDGFRR DGYKPRGSGV NGGRGYGRRN
401: SESNGDGKAY QNNGHGNTEA KN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)