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AT2G03500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT1G68670.1); Has 20396 Blast hits to 7290 proteins in 193 species: Archae - 14; Bacteria - 20; Metazoa - 401; Fungi - 967; Plants - 1637; Viruses - 8; Other Eukaryotes - 17349 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJMWeggNOG:ENOG410Y953EMBL:AC006284EMBL:AK221662EMBL:AY060559EMBL:AY133630EMBL:CP002685
EnsemblPlants:AT2G03500EnsemblPlants:AT2G03500.1entrez:814878Gene3D:1.10.10.60GeneID:814878GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009266GO:GO:0009740GO:GO:0010452GO:GO:0048579
GO:GO:1903507Gramene:AT2G03500.1hmmpanther:PTHR31003hmmpanther:PTHR31003:SF3HOGENOM:HOG000237574IntAct:Q9ZQ85InterPro:IPR001005
InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT2G03500ncoils:CoilOMA:KEHSEHHPfam:PF00249
Pfscan:PS51294PhylomeDB:Q9ZQ85PIR:B84449PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_027544.1SMR:Q9ZQ85
STRING:3702.AT2G03500.1SUPFAM:SSF46689TAIR:AT2G03500TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.27373UniProt:Q9ZQ85
Coordinates (TAIR10) chr2:+:1059926..1062259
Molecular Weight (calculated) 47964.40 Da
IEP (calculated) 7.13
GRAVY (calculated) -0.97
Length 432 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)