AT2G03470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ELM2 domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ELM2 domain-containing protein; FUNCTIONS IN: DNA binding; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), ELM2 (InterPro:IPR000949); BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT1G13880.1); Has 3810 Blast hits to 2751 proteins in 251 species: Archae - 13; Bacteria - 211; Metazoa - 978; Fungi - 430; Plants - 279; Viruses - 101; Other Eukaryotes - 1798 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:1045694..1047130 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51859.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.20 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.99 | ||||||||||||||||||||||||||||
| Length | 450 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGLKRPYDAE EMQKCNAKHA RQLSYKNHNQ FDEAIPYHHA SMEKKTNVLV EDLIGLCENP TWTNDANHVD KGFETTGLCQ EDSQSGVTTQ SDLSHQSSGS 101: DFTWKPVEDV YTCLMNQPPR KQVLVGSNHQ ADIPEFVKEE ILDQSEARTK EDLEGKLMRK CVIPMSDSDL CGTGQGRKEC LCLDKGSIRC VRRHIIEARE 201: SLVETIGYER FMELGLCEMG EEVASLWTEE EEDLFHKVVY SNPFSAGRDF WKQLKGTFPS RTMKELVSYY FNVFILRRRG IQNRFKALDV DSDDDEWQVE 301: YNIFNSTKSL DEEDNNGNRS SYEDNEEEEE TSSNDDDEEE EEEDDSSSND AHCVDTDKAS RDGFGEEVNV EDDSCMSFEL QDSNLIFSHN PIKNRECHRS 401: GEDSYSFDDQ RFTSDCWNKN NDLLPTSNII EEIFGQDDWG DKDDNNLKEK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)