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AT2G03420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 38 Blast hits to 38 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ32eggNOG:ENOG41126CIEMBL:AC006284EMBL:AK117566EMBL:BT005065EMBL:CP002685EnsemblPlants:AT2G03420
EnsemblPlants:AT2G03420.1entrez:814871GeneID:814871Gramene:AT2G03420.1hmmpanther:PTHR36730HOGENOM:HOG000239844KEGG:ath:AT2G03420
OMA:WSSPANAPhylomeDB:Q9ZQ78PIR:C84448Proteomes:UP000006548RefSeq:NP_565301.1STRING:3702.AT2G03420.1TAIR:AT2G03420
UniGene:At.41395UniGene:At.41396UniProt:Q9ZQ78
Coordinates (TAIR10) chr2:-:1035100..1035937
Molecular Weight (calculated) 19029.00 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.47
Length 170 amino acids
Sequence (TAIR10)
(BLAST)
001: MMQTKISSFS RPSFSLYEPR VIHHPRISMA LSSSAPSPFH HLLCKSTFPL AASLTLLLSP CTAEAGLMSG SPGIESVPGP ELPKIEFLDR FNAKNQKFYA
101: ENDARFKDSP LLKKLLENSK LNKEKNEREI QDKYCLRGAE WGVGDCSTTG MTDEEKEKFI TMLKKKTGVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)