AT2G03260.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.743 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : EXS (ERD1/XPR1/SYG1) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EXS (ERD1/XPR1/SYG1) family protein; LOCATED IN: integral to membrane; EXPRESSED IN: shoot apex, root; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), EXS, C-terminal (InterPro:IPR004342); BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT1G14040.1); Has 1118 Blast hits to 1057 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 258; Fungi - 395; Plants - 325; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:988106..992332 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93338.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.77 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 807 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKFGKELSSQ MVQEWQQAYV NYDYLKTLLK EIIKLKEKTN PPPPPHHAVP GEGISRKMTL YRAFSGLVQT PGKKRQSSRQ SNYSSEIDIE EGKAPILVSK 101: STHGLETTFL MTAEEGGEYE LVFFRRLDDE FNRVEKFYKE KVEEVMKDAI MLNKQMDALI AFRVKVENPV GWGWEERTVE MTRLASDIAT STAAIAASTP 201: ARTRTMNPRA QAHMEAIQEG SFSRENEDED HGSVRGATGD VKTSSLNTMR GARPAPIEVL DHIKINNTKA TPRSTIKGVL NSSSQNEIIF NRQNLNEVEE 301: KLKFAFVEFY QKLRLLKSYS FLNVLAFSKI LKKYDKITSR NASKSYMKMV DNSYLGSSDE LMKLIQRVES TFIKHFANGH RRKGMNILRP QMKREKHRVT 401: FSTGFSAGCI FSLIVALVAI IRTRKTMPEA EHNTYMNTMF PLYSLFGFIV LHITMYAIDI YYWKRYRVNY AFIFGCKQGT ELGYRQVLFL GFTIGTFALL 501: CVLGNLDMEV NPKTKNFKPL TELLPLFLLV ALFVVLIMPF HFLYRSTRFF FLTCLLHCLA APLYKVTLPD FFLGDQLTSQ VQALRSINFY ICYYGWGDFK 601: KRQNTCEASE IYIYSLYIVA SLPYLSRLLQ CMRRMIEERS LDQGYNGVKY LLTVIAVSLR TAYGYEVKNT KNPTSHLKVL AGSSSILAAV FCTYWDFVHD 701: WGLLNKTSKN RWLRDKLLIP QKKVYFIAMI LNVVLRFAWL QTILNFEFEF LHKQTTLAVV ASLEIMRRGM WNFFRVENEH LNNVGKFRAF KSVPLPFNYD 801: EDDEKDD |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)