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AT2G03160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.783
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : SKP1-like 19
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKP1-like 19 (SK19); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 15 (TAIR:AT3G25650.1); Has 1397 Blast hits to 1395 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 513; Fungi - 177; Plants - 528; Viruses - 11; Other Eukaryotes - 168 (source: NCBI BLink).
Protein Annotations
BioGrid:247eggNOG:COG5201eggNOG:KOG1724EMBL:AC005313
EMBL:CP002685EMBL:DQ056525EnsemblPlants:AT2G03160EnsemblPlants:AT2G03160.1
entrez:814845GeneID:814845Genevisible:O81058GO:GO:0005634
GO:GO:0006511GO:GO:0016567Gramene:AT2G03160.1hmmpanther:PTHR11165
HOGENOM:HOG000172184InParanoid:O81058IntAct:O81058InterPro:IPR001232
InterPro:IPR011333InterPro:IPR016072InterPro:IPR016073InterPro:IPR016897
KEGG:ath:AT2G03160KO:K03094OMA:EYCKTHVPaxDb:O81058
Pfam:O81058Pfam:PF01466Pfam:PF03931PhylomeDB:O81058
PIR:T02710PIRSF:PIRSF028729PRIDE:O81058PRO:PR:O81058
ProteinModelPortal:O81058Proteomes:UP000006548RefSeq:NP_565295.1SMART:SM00512
SMR:O81058STRING:3702.AT2G03160.1SUPFAM:SSF54695SUPFAM:SSF81382
TAIR:AT2G03160tair10-symbols:ASK19tair10-symbols:SK19UniGene:At.52614
UniPathway:UPA00143UniProt:O81058
Coordinates (TAIR10) chr2:+:959645..960247
Molecular Weight (calculated) 22716.40 Da
IEP (calculated) 4.18
GRAVY (calculated) -0.70
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSKKIVLTS SDGESFKVEE VVARKLQIVG HIIEDDCATN KIPIPNVTGE ILAKVIEYCK KHVEDDDDVV ETHESSTKGD KTVEEAKKKP DDVAVPESTE
101: GDDEAEDKKE KLNEWDAKFM KDFDIKTIFD IILAANYLNV QGLFDLCSKT IADYIKDMTP EEVRELFNIE NDFTPEEEEA IRNENAWTFE QDGKQQVPKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)