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AT2G03050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Mitochondrial transcription termination factor family protein
Curator
Summary (TAIR10)
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 93 (EMB93); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular response to singlet oxygen, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G34620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT49eggNOG:KOG1267EMBL:AC004138EMBL:AY219044
EMBL:AY649248EMBL:CP002685EnsemblPlants:AT2G03050EnsemblPlants:AT2G03050.1
entrez:814834GeneID:814834GO:GO:0003690GO:GO:0005739
GO:GO:0006355GO:GO:0009507GO:GO:0009793Gramene:AT2G03050.1
hmmpanther:PTHR13068hmmpanther:PTHR13068:SF36InterPro:IPR003690KEGG:ath:AT2G03050
KO:K15032OMA:MGIERSAPfam:PF02536PhylomeDB:Q84X53
PIR:G84443Proteomes:UP000006548RefSeq:NP_178405.2SMART:SM00733
SMR:Q84X53STRING:3702.AT2G03050.1TAIR:AT2G03050tair10-symbols:EMB93
tair10-symbols:SOLDAT10UniGene:At.41435UniProt:Q84X53
Coordinates (TAIR10) chr2:-:900094..900945
Molecular Weight (calculated) 32261.50 Da
IEP (calculated) 9.20
GRAVY (calculated) -0.05
Length 283 amino acids
Sequence (TAIR10)
(BLAST)
001: MIARCSLFPP PCFSAVRIRC FAGETSDTGI LFREKLIYLQ DLNVDPHKAL RVNPSLRSAP ISSVVSVETL LSSTGLSRPA VGRILDMFPD LLTSDPESEI
101: LPVLRFLSNE ISISEQDIPK SISRCPRLLI SSVDYQLRPA LTFLKTLGFV GRDTITSRNT VLLVSNVERT LIPKIEYLEE GLGFTREEVA KMVVRSPALL
201: TYSVDNNLVP KVEFFIEEMR GDVKELKRFP QYFSFSLERK IKPRHRLLKE HGILMPLSEM LKVSDGQFNH WLLELRLRSA ERR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)