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AT2G02980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At2g02980-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Encodes a chloroplast RNA editing factor.
Computational
Description (TAIR10)
ORGANELLE TRANSCRIPT PROCESSING 85 (OTP85); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 39959 Blast hits to 14548 proteins in 281 species: Archae - 3; Bacteria - 7; Metazoa - 132; Fungi - 233; Plants - 38891; Viruses - 0; Other Eukaryotes - 693 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC004138EMBL:AF517844EMBL:CP002685EnsemblPlants:AT2G02980EnsemblPlants:AT2G02980.1
entrez:814827Gene3D:1.25.40.10GeneID:814827Genevisible:Q8LK93GO:GO:0006397GO:GO:0008270GO:GO:0009507
GO:GO:0031425Gramene:AT2G02980.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF44HOGENOM:HOG000237569InParanoid:Q8LK93InterPro:IPR002885
InterPro:IPR011990InterPro:IPR032867iPTMnet:Q8LK93KEGG:ath:AT2G02980OMA:RDVQRFHPaxDb:Q8LK93Pfam:PF01535
Pfam:PF13041Pfam:PF14432Pfam:Q8LK93Pfscan:PS51375PhylomeDB:Q8LK93PIR:H84442PRIDE:Q8LK93
PRO:PR:Q8LK93PROSITE:PS51375ProteinModelPortal:Q8LK93Proteomes:UP000006548RefSeq:NP_178398.1SMR:Q8LK93STRING:3702.AT2G02980.1
SUPFAM:SSF48452TAIR:AT2G02980tair10-symbols:OTP85TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.41442UniProt:Q8LK93
Coordinates (TAIR10) chr2:+:868468..870279
Molecular Weight (calculated) 68173.50 Da
IEP (calculated) 7.48
GRAVY (calculated) -0.12
Length 603 amino acids
Sequence (TAIR10)
(BLAST)
001: MAISSASLIS SFSHAETFTK HSKIDTVNTQ NPILLISKCN SLRELMQIQA YAIKSHIEDV SFVAKLINFC TESPTESSMS YARHLFEAMS EPDIVIFNSM
101: ARGYSRFTNP LEVFSLFVEI LEDGILPDNY TFPSLLKACA VAKALEEGRQ LHCLSMKLGL DDNVYVCPTL INMYTECEDV DSARCVFDRI VEPCVVCYNA
201: MITGYARRNR PNEALSLFRE MQGKYLKPNE ITLLSVLSSC ALLGSLDLGK WIHKYAKKHS FCKYVKVNTA LIDMFAKCGS LDDAVSIFEK MRYKDTQAWS
301: AMIVAYANHG KAEKSMLMFE RMRSENVQPD EITFLGLLNA CSHTGRVEEG RKYFSQMVSK FGIVPSIKHY GSMVDLLSRA GNLEDAYEFI DKLPISPTPM
401: LWRILLAACS SHNNLDLAEK VSERIFELDD SHGGDYVILS NLYARNKKWE YVDSLRKVMK DRKAVKVPGC SSIEVNNVVH EFFSGDGVKS ATTKLHRALD
501: EMVKELKLSG YVPDTSMVVH ANMNDQEKEI TLRYHSEKLA ITFGLLNTPP GTTIRVVKNL RVCRDCHNAA KLISLIFGRK VVLRDVQRFH HFEDGKCSCG
601: DFW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)