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AT2G02950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phytochrome kinase substrate 1
Curator
Summary (TAIR10)
Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state. PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner. It is postulated to be a negative regulator of phyB signalling.
Computational
Description (TAIR10)
phytochrome kinase substrate 1 (PKS1); BEST Arabidopsis thaliana protein match is: phytochrome kinase substrate 2 (TAIR:AT1G14280.1); Has 564 Blast hits to 331 proteins in 102 species: Archae - 0; Bacteria - 114; Metazoa - 82; Fungi - 26; Plants - 127; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).
Protein Annotations
BioGrid:225DIP:DIP-34783NeggNOG:ENOG410IXAUeggNOG:ENOG4111ACREMBL:AC004138EMBL:AF149053EMBL:AF325064
EMBL:AY052708EMBL:AY063721EMBL:CP002685EnsemblPlants:AT2G02950EnsemblPlants:AT2G02950.1entrez:814823GeneID:814823
Genevisible:Q9SWI1GO:GO:0005737GO:GO:0005886GO:GO:0009585GO:GO:0009638GO:GO:0009958GO:GO:0010017
GO:GO:0010114GO:GO:0010218Gramene:AT2G02950.1hmmpanther:PTHR33781hmmpanther:PTHR33781:SF4HOGENOM:HOG000115571InParanoid:Q9SWI1
IntAct:Q9SWI1iPTMnet:Q9SWI1KEGG:ath:AT2G02950OMA:PASPTCYPaxDb:Q9SWI1Pfam:Q9SWI1PhylomeDB:Q9SWI1
PIR:E84442PIR:T52304PRIDE:Q9SWI1PRO:PR:Q9SWI1ProteinModelPortal:Q9SWI1Proteomes:UP000006548RefSeq:NP_565292.1
STRING:3702.AT2G02950.1TAIR:AT2G02950tair10-symbols:PKS1UniGene:At.24751UniProt:Q9SWI1
Coordinates (TAIR10) chr2:-:855149..856468
Molecular Weight (calculated) 48087.30 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.73
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTLTPSSAS TPKTSFDFMK NNNSHSSLYV SSSSYLSSKE DALVTTKKLM EPSKTLNMSI NPKQEEFGDE KKMVKKAPED PEIGVFGAEK YFNGDMDSDQ
101: GSSVLSLTNP EVERTVVDSK QSAKKSTGTP SVRSESSWNS QSVLLQNKLV NSCNSSFKEK KNSNGQIQKV TNNKKSFLAN LGCKCACSDG DSVDVEEKTS
201: VKRSADPNIS VITMRSSADM NTELIKIQKQ EELSQRKSLE VFGSPVAIEK KSSVVQKKLP LPPWKSRTEE DDTKSEGSDS SSDLFEIEGL TGNPKPFLTR
301: QGSDPASPTC YAPSEVSVEW SIVTASAADF SVMSECATSP VRRNRPTQIP RIPITAKSAP QRRKSSSSSG GNGFLMSCKS HKSVMVSGDL DRRSSMNKTQ
401: PSYVPRFPME TTKPKSFETR RRISNSSISH TQSSLLYSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)