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AT2G02870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G14330.1); Has 7278 Blast hits to 4161 proteins in 259 species: Archae - 4; Bacteria - 397; Metazoa - 5328; Fungi - 9; Plants - 1063; Viruses - 147; Other Eukaryotes - 330 (source: NCBI BLink).
Protein Annotations
BioGrid:220eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AC004138
EMBL:AK317194EMBL:AY060567EMBL:AY139977EMBL:BT002216
EMBL:CP002685EnsemblPlants:AT2G02870EnsemblPlants:AT2G02870.1EnsemblPlants:AT2G02870.2
EnsemblPlants:AT2G02870.3entrez:814818Gene3D:2.130.10.80GeneID:814818
Genevisible:Q8L736GO:GO:0005634GO:GO:0016567Gramene:AT2G02870.1
Gramene:AT2G02870.2Gramene:AT2G02870.3hmmpanther:PTHR24413hmmpanther:PTHR24413:SF138
HOGENOM:HOG000239488InParanoid:Q8L736IntAct:Q8L736InterPro:IPR006652
InterPro:IPR015916KEGG:ath:AT2G02870OMA:RGTWRVIPaxDb:Q8L736
Pfam:PF01344Pfam:Q8L736PhylomeDB:Q8L736PIR:H84441
PRIDE:Q8L736PRO:PR:Q8L736ProteinModelPortal:Q8L736Proteomes:UP000006548
RefSeq:NP_001030959.1RefSeq:NP_001030960.1RefSeq:NP_178390.1SMART:SM00612
SMR:Q8L736STRING:3702.AT2G02870.1SUPFAM:0052715TAIR:AT2G02870
UniGene:At.27431UniPathway:UPA00143UniProt:Q8L736
Coordinates (TAIR10) chr2:+:838378..839781
Molecular Weight (calculated) 51700.80 Da
IEP (calculated) 4.82
GRAVY (calculated) -0.42
Length 467 amino acids
Sequence (TAIR10)
(BLAST)
001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)