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AT2G02740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26987276 (2016): plastid
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22616989 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ssDNA-binding transcriptional regulator
Curator
Summary (TAIR10)
Encodes a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to the plastid and not the nucleus.
Computational
Description (TAIR10)
WHIRLY 3 (WHY3); FUNCTIONS IN: DNA binding; INVOLVED IN: defense response; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Plant transcription factor (InterPro:IPR013742); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT1G14410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFH8eggNOG:ENOG41124UZEMBL:AC002521EMBL:AK230205EMBL:BT015336EMBL:BT015641EMBL:CP002685
EnsemblPlants:AT2G02740EnsemblPlants:AT2G02740.1entrez:814803Gene3D:2.30.31.10GeneID:814803Genevisible:Q66GR6GO:GO:0003677
GO:GO:0006281GO:GO:0006351GO:GO:0006355GO:GO:0006952GO:GO:0009295GO:GO:0009507GO:GO:0009508
GO:GO:0009570hmmpanther:PTHR31745hmmpanther:PTHR31745:SF2HOGENOM:HOG000006196InParanoid:Q66GR6InterPro:IPR009044InterPro:IPR013742
KEGG:ath:AT2G02740OMA:GDYEWSRPaxDb:Q66GR6PDB:4KOQPDBsum:4KOQPfam:PF08536Pfam:Q66GR6
PhylomeDB:Q66GR6PIR:T00854PRIDE:Q66GR6PRO:PR:Q66GR6ProteinModelPortal:Q66GR6Proteomes:UP000006548RefSeq:NP_001077872.1
RefSeq:NP_178377.2SMR:Q66GR6STRING:3702.AT2G02740.1SUPFAM:SSF54447TAIR:AT2G02740tair10-symbols:ATWHY3tair10-symbols:PTAC11
tair10-symbols:WHY3UniGene:At.41460UniGene:At.66386UniProt:Q66GR6
Coordinates (TAIR10) chr2:+:769389..770993
Molecular Weight (calculated) 29729.40 Da
IEP (calculated) 10.10
GRAVY (calculated) -0.25
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQLLSSPPM AVFSKTFINH KFSDARFLSS HSILTSGGFA GKIIPLKPTA RLKLTVKSRQ SDYFEKQRFG DSSSSQNAEV SSPRFYVGHS IYKGKAALTI
101: EPRAPEFVAL ESGAFKLTKE GFLLLQFAPA AGVRQYDWSR KQVFSLSVTE IGNLVSLGPR ESCEFFHDPF KGKGSDEGKV RKVLKVEPLP DGSGRFFNLS
201: VQNKLLNVDE SVYIPITKAE FAVLISAFNF VLPHLIGWSA FANSIKPEDS NRLNNASPKY GGDYEWSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)