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AT2G02730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.885
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1664)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1664); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G27000.1); Has 150 Blast hits to 150 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJSZeggNOG:ENOG410Y9WVEMBL:AC002521EMBL:AK119082
EMBL:AY088742EMBL:BT005277EMBL:CP002685EnsemblPlants:AT2G02730
EnsemblPlants:AT2G02730.1EnsemblPlants:AT2G02730.2entrez:814802GeneID:814802
Gramene:AT2G02730.1Gramene:AT2G02730.2hmmpanther:PTHR31903hmmpanther:PTHR31903:SF3
HOGENOM:HOG000237587InterPro:IPR012458KEGG:ath:AT2G02730OMA:SNTCIVL
Pfam:PF07889PhylomeDB:O64509PIR:T00855Proteomes:UP000006548
RefSeq:NP_178376.1RefSeq:NP_973402.1TAIR:AT2G02730TMHMM:TMhelix
UniGene:At.41462UniGene:At.48411UniProt:O64509
Coordinates (TAIR10) chr2:-:765280..767336
Molecular Weight (calculated) 30063.40 Da
IEP (calculated) 4.89
GRAVY (calculated) -0.14
Length 276 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMQSGIGLS KILILAGAGY TSTILVKNGK MADILGELQA LVKRFEKSGD HVDDDSDAMT TQMQRLAMEV RQLASSRQIT VMNGAQGADF TPFIVPAATL
101: GALGYGYMWF KGISFSDIMC VTKRNMENAV SNLTKHLDTV SEAILNAKKH LSQRLQKVDD KLDLQKDLLK GVQDNVGLAL EDLANIGDDF DAMHSIFGGM
201: GGKLDSIEYK QNIANMGLIY LCDSLGGENH KMPDILMQEK LRLSGKSNTC IVLTTEETSS SEGLKESDKI QLLDDC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)