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AT2G02720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectate lyase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT1G14420.1); Has 1746 Blast hits to 1737 proteins in 278 species: Archae - 0; Bacteria - 753; Metazoa - 0; Fungi - 264; Plants - 699; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G02720-MONOMERCAZy:PL1EC:4.2.2.2eggNOG:COG3866eggNOG:ENOG410II3GEMBL:AC002521EMBL:BT005757
EMBL:CP002685EnsemblPlants:AT2G02720EnsemblPlants:AT2G02720.1entrez:814801ExpressionAtlas:O64510Gene3D:2.160.20.10GeneID:814801
Genevisible:O64510GO:GO:0030570GO:GO:0045490GO:GO:0046872Gramene:AT2G02720.1hmmpanther:PTHR31683hmmpanther:PTHR31683:SF7
HOGENOM:HOG000237948InParanoid:O64510InterPro:IPR002022InterPro:IPR007524InterPro:IPR011050InterPro:IPR012334InterPro:IPR018082
KEGG:00040+4.2.2.2KEGG:ath:AT2G02720KO:K01728OMA:CITFATIPaxDb:O64510Pfam:O64510Pfam:PF00544
Pfam:PF04431PhylomeDB:O64510PIR:T00856PRIDE:O64510PRINTS:PR00807PRO:PR:O64510ProteinModelPortal:O64510
Proteomes:UP000006548RefSeq:NP_178375.1SMART:SM00656SMR:O64510STRING:3702.AT2G02720.1SUPFAM:SSF51126TAIR:AT2G02720
TMHMM:TMhelixUniGene:At.41462UniGene:At.48411UniPathway:UPA00545UniProt:O64510UniProt:Q5U1E6
Coordinates (TAIR10) chr2:+:763173..764834
Molecular Weight (calculated) 51260.40 Da
IEP (calculated) 10.06
GRAVY (calculated) -0.46
Length 455 amino acids
Sequence (TAIR10)
(BLAST)
001: MVNLGSYVFV FVALSLTVVV PSVQAHIAEY DEYWTQRQTN ALRETLESYD PNPENVTDHF NYHAALAMET TGIVNETRRD LRQVGRGKKT TRRGGRFESL
101: NAIDKCWRGD KNWDKNRKKL ADCVLGFGRK TTGGKNGPIY VVTDPSDNDL LKPKPGTIRH AVTRDRPLWI IFARSMIIKL QQELIITNDK TIDGRGAKIY
201: ITGGAGLTLQ FVRNVIIHNI HIKQIKRGAG GLIIDSEQHF GLRTVSDGDG INIFGATNVW IDHVSMTDCS DGMIDAIMGS TAITISNSHF TDHDEVMLFG
301: GTNKDVIDKK MQITVAFNHF GKRLKQRMPR VRFGLVHVVN NDYTHWEMYA IGGNMNPTII SQGNRFIAPP IEDSKQVTKR EYTPYPEWKS WNWQSEKDYF
401: LNGAYFVQSG KANAWSATPK NPIPRKFAIR PQPGTKVRRL TKDAGTLGCK PGKSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)