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AT2G02620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.542
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, RanBP2-type (InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G02610.1); Has 1447 Blast hits to 628 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 1434; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
EMBL:AK227796EMBL:CP002685EnsemblPlants:AT2G02620EnsemblPlants:AT2G02620.1
entrez:814791Gene3D:3.30.40.10GeneID:814791GO:GO:0005622
GO:GO:0008270GO:GO:0035556GO:GO:0047134Gramene:AT2G02620.1
hmmpanther:PTHR32410hmmpanther:PTHR32410:SF152InterPro:IPR001876InterPro:IPR001965
InterPro:IPR004146InterPro:IPR011424InterPro:IPR013083KEGG:ath:AT2G02620
Pfam:PF03107Pfam:PF07649PhylomeDB:Q0WSX0Proteomes:UP000006548
RefSeq:NP_178365.2SMART:SM00249SMART:SM00547SMR:Q0WSX0
SUPFAM:SSF57889TAIR:AT2G02620UniGene:At.41475UniProt:Q0WSX0
Coordinates (TAIR10) chr2:+:717686..719227
Molecular Weight (calculated) 58393.20 Da
IEP (calculated) 6.45
GRAVY (calculated) -0.14
Length 513 amino acids
Sequence (TAIR10)
(BLAST)
001: MDCGFCEGDK VGTCYYYCVT CDERYHKECV ESPLEITYPS HPQHSLQIYL STKPFEHCIL CSRKAHNIIY YCDVCDIYMH VLCAQATIPF FIDQPKRHDH
101: TLTLFPRQAS LTCNVCGLVN KLHLTYVCSI CNFAAHSDCI HIPQTIRMSR HDHRISFTSS LPLGIWSCGV CRKEIDGDYG AYICNICSGY AVHTRCALRL
201: DIWDGIDLEG VPEEDEEVEP FERISDGIIL HFSHGCQLKL TTYEVNGEEK FCQACVLPIN EKNLYVCVEC GFILHETCAD APRKKFHPLH PHPLKQRVAT
301: ADLERGFSYL ACKRLSNSFR YECDKEGCDC VLDVVCASVS EPFDYQGHPH PLFLALDPKE KPICNICKST KVHKLLNCIE VECNFVICFT CATLPYMVRY
401: KHDEHYLTFC RGDEAGGSDW CELCEGKLAI GGKEGFYKCT YCCTTLHINC LLGPDPYLKP DQTIPTDQIE VVLQRNNSAS RQICSKCNIR CPYPTFAVYT
501: KEMVSHIRCA LTC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)