AT2G02570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nucleic acid binding;RNA binding | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 339 Blast hits to 339 proteins in 158 species: Archae - 0; Bacteria - 5; Metazoa - 136; Fungi - 89; Plants - 55; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:698361..700794 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33472.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.23 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||||||||||
| Length | 300 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGGVEELSI EQLASSISTY KEQLEQVRQL LSEDPRNSEY ADMEKELKEV IALTEEVLAT AKQNEISLSD AGVSAEATPG SPDLEGAWEK TGLRNDPIHE 101: GKFPVGTKVQ AVFSDDGEWY DATIEAHTAN GYFVAYDEWG NKEEVDPDNV RPIEQNAIVE AERLAQATKN ALKRKIEKAA SSDYQTKTLP AKLKIDPNDP 201: EDVKIAKRKK IHAFKSKARF EQLEVVQNKK QNDWQQFQTT KAKTKKVGFF TGRKKESIFK SPEDPFGKVG VTGSGKGLTD FQKREKHLHL KSGNAEGTDE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)