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AT2G02570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nucleic acid binding;RNA binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 339 Blast hits to 339 proteins in 158 species: Archae - 0; Bacteria - 5; Metazoa - 136; Fungi - 89; Plants - 55; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110IGDeggNOG:KOG3026EMBL:BT002938EMBL:BT004365EMBL:CP002685EnsemblPlants:AT2G02570EnsemblPlants:AT2G02570.1
EnsemblPlants:AT2G02570.2EnsemblPlants:AT2G02570.4entrez:814787ExpressionAtlas:Q84K41GeneID:814787GO:GO:0003723GO:GO:0005634
GO:GO:0005737GO:GO:0006397Gramene:AT2G02570.1Gramene:AT2G02570.2Gramene:AT2G02570.4IntAct:Q84K41InterPro:IPR002999
InterPro:IPR010304ncoils:CoilOMA:NKWLHFTPfam:PF06003Pfscan:PS50304PhylomeDB:Q84K41PROSITE:PS50304
Proteomes:UP000006548RefSeq:NP_001077871.1RefSeq:NP_178361.2RefSeq:NP_849927.1SMART:SM00333SMR:Q84K41STRING:3702.AT2G02570.1
SUPFAM:SSF63748TAIR:AT2G02570UniGene:At.21657UniProt:Q84K41
Coordinates (TAIR10) chr2:-:698361..700794
Molecular Weight (calculated) 33472.10 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.84
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGGVEELSI EQLASSISTY KEQLEQVRQL LSEDPRNSEY ADMEKELKEV IALTEEVLAT AKQNEISLSD AGVSAEATPG SPDLEGAWEK TGLRNDPIHE
101: GKFPVGTKVQ AVFSDDGEWY DATIEAHTAN GYFVAYDEWG NKEEVDPDNV RPIEQNAIVE AERLAQATKN ALKRKIEKAA SSDYQTKTLP AKLKIDPNDP
201: EDVKIAKRKK IHAFKSKARF EQLEVVQNKK QNDWQQFQTT KAKTKKVGFF TGRKKESIFK SPEDPFGKVG VTGSGKGLTD FQKREKHLHL KSGNAEGTDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)