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AT2G02360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phloem protein 2-B10
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
phloem protein 2-B10 (PP2-B10); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G02240.1); Has 572 Blast hits to 558 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 567; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:170DNASU:814767eggNOG:ENOG410IWJ9eggNOG:ENOG410YD6D
EMBL:AC005312EMBL:AK227207EMBL:BT025799EMBL:CP002685
EnsemblPlants:AT2G02360EnsemblPlants:AT2G02360.1entrez:814767GeneID:814767
Genevisible:Q9ZVQ6GO:GO:0016567GO:GO:0030246Gramene:AT2G02360.1
hmmpanther:PTHR32278hmmpanther:PTHR32278:SF6HOGENOM:HOG000239607InParanoid:Q9ZVQ6
IntAct:Q9ZVQ6InterPro:IPR001810InterPro:IPR025886KEGG:ath:AT2G02360
OMA:EEVPQNYPaxDb:Q9ZVQ6Pfam:PF00646Pfam:PF14299
Pfam:Q9ZVQ6Pfscan:PS50181PhylomeDB:Q9ZVQ6PIR:G84435
PRIDE:Q9ZVQ6PRO:PR:Q9ZVQ6PROSITE:PS50181ProteinModelPortal:Q9ZVQ6
Proteomes:UP000006548RefSeq:NP_178341.1SMART:SM00256STRING:3702.AT2G02360.1
SUPFAM:SSF81383TAIR:AT2G02360tair10-symbols:AtPP2-B10tair10-symbols:PP2-B10
UniGene:At.41496UniPathway:UPA00143UniProt:Q9ZVQ6
Coordinates (TAIR10) chr2:-:619699..620736
Molecular Weight (calculated) 31295.70 Da
IEP (calculated) 8.55
GRAVY (calculated) -0.34
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)