AT2G02300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.930 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phloem protein 2-B5 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
phloem protein 2-B5 (PP2-B5); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-B6 (TAIR:AT2G02310.1); Has 491 Blast hits to 482 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 491; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:606561..607825 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32016.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.91 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||
| Length | 284 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGQKHGVDTR GKGAEFCGCW EILTEFINGS SASFDDLPDD CLAIISSFTS TPRDAFLAAL VSKSFGLQFN SDSVWEKFLP PPDYVSLLPK SRVFSSKKEL 101: YFALCDPFPN HNGKMSFRLD KASGKKCVML SAKKLLISRV VNPKYWKWIS IPESRFDEVP ELLNIDSFDI RGVLNTRIIS PGTHYSAYIV YTKTSHFNGF 201: QTSPIQAGVG FQRHGMSKTF IRFDSKKRQD GWMEAKIGDF YNEGGLIGFN LIEVSVVDVA RYPHMNMKSG LIIEGIEFRP KDSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)