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AT2G02230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.651
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phloem protein 2-B1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
phloem protein 2-B1 (PP2-B1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G02240.1); Has 552 Blast hits to 533 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 552; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:157eggNOG:ENOG410IWJ9eggNOG:ENOG410YD6DEMBL:AC005312EMBL:AK229118EMBL:BT010729EMBL:BT020602
EMBL:CP002685EnsemblPlants:AT2G02230EnsemblPlants:AT2G02230.1entrez:814754GeneID:814754Genevisible:Q6NPT8GO:GO:0005634
GO:GO:0016567GO:GO:0030246Gramene:AT2G02230.1hmmpanther:PTHR32278hmmpanther:PTHR32278:SF6HOGENOM:HOG000239607InParanoid:Q6NPT8
IntAct:Q6NPT8InterPro:IPR001810InterPro:IPR025886KEGG:ath:AT2G02230OMA:METQNGNPaxDb:Q6NPT8Pfam:PF00646
Pfam:PF14299Pfam:Q6NPT8Pfscan:PS50181PhylomeDB:Q6NPT8PIR:E84434PRIDE:Q6NPT8PRO:PR:Q6NPT8
PROSITE:PS50181ProteinModelPortal:Q6NPT8Proteomes:UP000006548RefSeq:NP_178331.2STRING:3702.AT2G02230.1SUPFAM:SSF81383TAIR:AT2G02230
tair10-symbols:AtPP2-B1tair10-symbols:PP2-B1UniGene:At.41510UniPathway:UPA00143UniProt:Q6NPT8
Coordinates (TAIR10) chr2:-:590393..591595
Molecular Weight (calculated) 37131.70 Da
IEP (calculated) 5.78
GRAVY (calculated) -0.39
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)