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AT2G02100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : low-molecular-weight cysteine-rich 69
Curator
Summary (TAIR10)
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational
Description (TAIR10)
low-molecular-weight cysteine-rich 69 (LCR69); FUNCTIONS IN: peptidase inhibitor activity; INVOLVED IN: defense response; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 68 (TAIR:AT2G02130.1); Has 400 Blast hits to 400 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 400; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:144eggNOG:ENOG410J2FQeggNOG:ENOG410YXD4EMBL:AC005936
EMBL:AF370355EMBL:AY803259EMBL:AY803262EMBL:CP002685
EMBL:X69139EMBL:Z18455EnsemblPlants:AT2G02100EnsemblPlants:AT2G02100.1
entrez:814741Gene3D:3.30.30.10GeneID:814741Genevisible:Q39182
GO:GO:0005576GO:GO:0005618GO:GO:0005886GO:GO:0006952
GO:GO:0009505GO:GO:0031640GO:GO:0050832Gramene:AT2G02100.1
hmmpanther:PTHR33147HOGENOM:HOG000238637InParanoid:Q39182IntAct:Q39182
InterPro:IPR003614InterPro:IPR008176InterPro:IPR008177KEGG:ath:AT2G02100
OMA:RDSNCATPaxDb:Q39182Pfam:PF00304Pfam:Q39182
PhylomeDB:Q39182PIR:S30578PRIDE:Q39182PRINTS:PR00288
PRO:PR:Q39182PROSITE:PS00940ProteinModelPortal:Q39182Proteomes:UP000006548
RefSeq:NP_178319.1scanprosite:PS00940SMART:SM00505SMR:Q39182
STRING:3702.AT2G02100.1SUPFAM:SSF57095TAIR:AT2G02100tair10-symbols:LCR69
tair10-symbols:PDF2.2TMHMM:TMhelixUniGene:At.24172UniProt:Q39182
Coordinates (TAIR10) chr2:+:528397..528885
Molecular Weight (calculated) 8524.58 Da
IEP (calculated) 9.05
GRAVY (calculated) 0.20
Length 77 amino acids
Sequence (TAIR10)
(BLAST)
1: MKLSMRLISA VLIMFMIFVA TGMGPVTVEA RTCESQSHRF KGTCVSASNC ANVCHNEGFV GGNCRGFRRR CFCTRHC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)