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AT2G01970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:21433285 (2011): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): Golgi
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Endomembrane protein 70 protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 Endomembrane protein 70 protein family; INVOLVED IN: transport; LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT1G14670.1); Has 1574 Blast hits to 1528 proteins in 319 species: Archae - 0; Bacteria - 2; Metazoa - 611; Fungi - 238; Plants - 459; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink).
Protein Annotations
BioGrid:131eggNOG:ENOG410XSVBeggNOG:KOG1277EMBL:AC006532
EMBL:AK221852EMBL:AK226487EMBL:AK317573EMBL:AY058869
EMBL:CP002685EnsemblPlants:AT2G01970EnsemblPlants:AT2G01970.1entrez:814728
GeneID:814728Genevisible:Q9ZPS7GO:GO:0000139GO:GO:0005768
GO:GO:0005774GO:GO:0005794GO:GO:0005802GO:GO:0009505
GO:GO:0009506GO:GO:0010008GO:GO:0016021Gramene:AT2G01970.1
hmmpanther:PTHR10766hmmpanther:PTHR10766:SF58HOGENOM:HOG000216680InParanoid:Q9ZPS7
InterPro:IPR004240InterPro:IPR020846KEGG:ath:AT2G01970OMA:SFEKRMD
PANTHER:PTHR10766PaxDb:Q9ZPS7Pfam:PF02990Pfam:Q9ZPS7
PhylomeDB:Q9ZPS7PIR:D84431PRIDE:Q9ZPS7PRO:PR:Q9ZPS7
ProteinModelPortal:Q9ZPS7Proteomes:UP000006548RefSeq:NP_178306.1STRING:3702.AT2G01970.1
SUPFAM:SSF103473TAIR:AT2G01970TMHMM:TMhelixUniGene:At.48409
UniGene:At.71255UniProt:Q9ZPS7
Coordinates (TAIR10) chr2:-:452197..454819
Molecular Weight (calculated) 68052.60 Da
IEP (calculated) 7.09
GRAVY (calculated) 0.18
Length 592 amino acids
Sequence (TAIR10)
(BLAST) 		001: MRLPTTLLLF IGALIFSGAG TVRSDASDHR YKDGDSVPLY ANKVGPFHNP SETYRYFDLP FCIPEGVKDK KEALGEVLNG DRLVSAPYKL NFRDEKDSEV
101: YCKKKLSREE VEHFRRAVEK DYYFQMYYDD LPIWGFIGKV DKESKSDPSE FKYFLYKHIQ FEILYNKDRV IEINARMDPH SLVDLTEDKE VDAEFMYTVK
201: WKETETSFEK RMDKYAMSSS LPHHLEIHWF SIINSCVTVL LLTGFLATIL MRVLKNDFMK YAQDEEAADD QEETGWKYIH GDVFRFPKNK SLFAASLGSG
301: TQLFTLTIFI FMLSLVGVFY PYNRGALFTA LVVIYALTSG IAGYTASSFY CQLEGKNWVR NLLLTGGLFC GPLFLTFCFL NTVAIAYSAT AALPFGTIIV
401: IVLIWTLVTS PLLVLGGIAG KNSKAEFQAP VRTTKYPREI PPLPWYRSAV PQMAMAGFLP FSAIYIELYY IFASVWGHRI YTIYSILFIV FIILLIVTAF
501: ITVALTYFQL AAEDHEWWWR SFLCGGSTGL FIYAYCLYYY YARSDMSGFM QTSFFFGYMA CICYGFFLML GTVGFRAALL FVRHIYRSIK CE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)