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AT2G01940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : C2H2-like zinc finger protein
Curator
Summary (TAIR10)
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational
Description (TAIR10)
SHOOT GRAVITROPISM 5 (SGR5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 34856 Blast hits to 17366 proteins in 321 species: Archae - 1; Bacteria - 0; Metazoa - 32828; Fungi - 237; Plants - 754; Viruses - 1; Other Eukaryotes - 1035 (source: NCBI BLink).
Protein Annotations
BioGrid:128eggNOG:COG5048eggNOG:KOG1721EMBL:AC006532
EMBL:AK226703EMBL:BX819715EMBL:CP002685EnsemblPlants:AT2G01940
EnsemblPlants:AT2G01940.1EnsemblPlants:AT2G01940.2EnsemblPlants:AT2G01940.3entrez:814725
ExpressionAtlas:F4IPE3Gene3D:3.30.160.60GeneID:814725Genevisible:F4IPE3
GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0046872hmmpanther:PTHR34946hmmpanther:PTHR34946:SF2HOGENOM:HOG000243173
InterPro:IPR007087InterPro:IPR013087InterPro:IPR015880KEGG:ath:AT2G01940
ncoils:CoilOMA:RPIHQRIPaxDb:F4IPE3Pfam:F4IPE3
Pfscan:PS50157PIR:A84431PRIDE:F4IPE3PRO:PR:F4IPE3
PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:F4IPE3Proteomes:UP000006548
RefSeq:NP_001030949.2RefSeq:NP_001077868.1RefSeq:NP_178303.2scanprosite:PS00028
SMART:SM00355SMR:F4IPE3STRING:3702.AT2G01940.3SUPFAM:SSF57667
TAIR:AT2G01940tair10-symbols:ATIDD15tair10-symbols:SGR5UniGene:At.42019
UniGene:At.67617UniProt:F4IPE3
Coordinates (TAIR10) chr2:+:432652..434917
Molecular Weight (calculated) 50143.10 Da
IEP (calculated) 9.32
GRAVY (calculated) -0.84
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)